Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_N09
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0537 + 25363026-25363217,25363672-25363828,25364660-253646... 53 1e-07
03_03_0158 - 14951504-14951568,14952722-14952797,14952876-149529... 46 1e-05
01_05_0754 + 24933860-24934031,24936035-24936104,24936192-249363... 29 1.4
07_01_0748 - 5735420-5735593,5735735-5735953,5736353-5736532,573... 29 1.8
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686 28 4.2
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498... 27 5.5
01_01_0268 - 2214923-2215048,2215131-2215286,2215371-2215469,221... 27 5.5
08_02_0313 - 15659600-15659716,15660376-15660495,15660581-156606... 27 7.3
03_06_0154 + 32029133-32029765 27 7.3
08_02_1238 + 25486263-25487574,25488210-25489117 27 9.6
>03_05_0537 +
25363026-25363217,25363672-25363828,25364660-25364694,
25364803-25364848,25365277-25365311
Length = 154
Score = 52.8 bits (121), Expect = 1e-07
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Frame = +2
Query: 104 PSVSWAQRSARVFLTFNVECVKPDI-KIERKTI-SFKGICEPEKKLHEVVIPLYSQVDPD 277
P V WAQRS +++LT ++ K + K E + + SF + E + L+ V P+
Sbjct: 7 PEVLWAQRSEKIYLTISLPDAKDVVLKTEPQGLFSFLAVANGEP--FSFTLELFDSVLPE 64
Query: 278 KSAYINKGRLIEVVLAKENTDEPFWPSLTSDKKKHHWLKVDFNRW 412
S K L ++ + + + +W L ++KH ++KVD+N+W
Sbjct: 65 GSKTKTKMGLRNIICSIQKEKKGWWKRLLKSEEKHPYIKVDWNKW 109
>03_03_0158 -
14951504-14951568,14952722-14952797,14952876-14952943,
14952997-14953156,14953239-14953425,14953982-14953986
Length = 186
Score = 46.0 bits (104), Expect = 1e-05
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +2
Query: 104 PSVSWAQRSARVFLTF---NVECVKPDIKIERKTI-SFKGICEPEKKLHEVVIPLYSQVD 271
PS WAQRS +VFLT + VK ++K E + I S KG + +E+ + L+ V+
Sbjct: 5 PSTKWAQRSDKVFLTIELPDARDVKLNLKPEGQFIFSAKGPADDTP--YELDLELFDAVN 62
Query: 272 PDKSAYINKGRLIEVVLAKENTDEPFWPS-LTSDKKKHHWLKVDFNRWQ 415
++S R I ++ K + +WP L + K +LKVD+++WQ
Sbjct: 63 VEESKAAVAARSICYLIKK--AESKWWPRLLKKEGKPPVFLKVDWDKWQ 109
>01_05_0754 +
24933860-24934031,24936035-24936104,24936192-24936316,
24936539-24936677,24936926-24937022,24937105-24937170,
24937478-24937616,24938149-24938258,24938355-24938459,
24938579-24938686
Length = 376
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 254 LYSQVDPDKSAYINKGRLIEVVLAKENTDEPFWPSLTSDKK 376
L+S++ P+KS Y +E+ LAK ++ W SL DKK
Sbjct: 220 LFSKIIPEKSRYQVLSTKVEIRLAK--AEQITWTSLDYDKK 258
>07_01_0748 -
5735420-5735593,5735735-5735953,5736353-5736532,
5736602-5736739,5736852-5737052,5737859-5737986,
5738114-5738189,5738354-5738503,5738594-5739115,
5739208-5739357,5739559-5739807,5740249-5740440,
5740890-5740937,5741589-5741717,5741821-5741935,
5742044-5742159,5742341-5742415,5742562-5742696
Length = 998
Score = 29.1 bits (62), Expect = 1.8
Identities = 24/109 (22%), Positives = 45/109 (41%)
Frame = +2
Query: 56 IIKLFANMSSEIITPPPSVSWAQRSARVFLTFNVECVKPDIKIERKTISFKGICEPEKKL 235
++ + A M I + P V +A V+ T + P+I + K PE
Sbjct: 360 VLDMMAVMLENIASTP--VVARSTAAAVYRTAQIIASVPNITYQNKVF-------PEALF 410
Query: 236 HEVVIPLYSQVDPDKSAYINKGRLIEVVLAKENTDEPFWPSLTSDKKKH 382
H++++ + + PD A + R+ +VL + S++ KKH
Sbjct: 411 HQLLLTM---IHPDHEARVAAHRIFAIVLVPSSVAPSIQASVSGQAKKH 456
>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
Length = 959
Score = 27.9 bits (59), Expect = 4.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 226 LWFTYAFEGYCFSFNFDI 173
LW++ ++GYCF FD+
Sbjct: 290 LWYSDPYKGYCFKCEFDL 307
>01_05_0282 -
20347915-20348874,20348968-20349012,20349568-20349816,
20350393-20350581,20351051-20351155,20351165-20351488,
20351493-20351555
Length = 644
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 287 YINKGRLIEVVLAKENT---DEPFWPSLTSDKKKHHW 388
+I +G L E+VL+ T D + SL DK+K HW
Sbjct: 12 FILRGALYEIVLSNYPTRLRDNAWEHSLIHDKEKGHW 48
>01_01_0268 -
2214923-2215048,2215131-2215286,2215371-2215469,
2215557-2215631,2215732-2215800,2216515-2216713,
2220162-2220267,2221117-2221588
Length = 433
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 38 GVSDSKIIKLFANMSSEIITPPPSVSW 118
G DS+ KL A ++S IIT P++ W
Sbjct: 103 GGDDSEQSKLRAGLNSAIITEKPNIKW 129
>08_02_0313 -
15659600-15659716,15660376-15660495,15660581-15660679,
15660802-15660913,15661025-15661128,15661316-15661495,
15661612-15661881,15662529-15662825,15663432-15663677
Length = 514
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 287 YINKGRLIEVVLAKENTDEPFWPSLTSDK-KKHHWLKVDFN 406
Y N+G +EV+ A+++ D P W T+D +++ WL + N
Sbjct: 159 YKNEG-FVEVLAAQQSPDNPNWFQGTADAVRQYLWLFEEHN 198
>03_06_0154 + 32029133-32029765
Length = 210
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -1
Query: 147 VKNTRALL*AHETDGGGVIISDDIFANNFIILESETPHHPLL 22
V N RA E DGGG DD+ A+ II E HH L+
Sbjct: 147 VSNLRA---RRERDGGG---GDDVDAHATIIRHGEEKHHSLV 182
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -1
Query: 174 SGFTHSTLNVKNTRALL*AHETDGGGVIISDDIFANNFIILESETPHHPLLG 19
S FT L V TR + + G D+FA ++LE T H LLG
Sbjct: 536 SSFTD--LGVAGTRGYIAPEYSVGHKATRQTDVFAFGVLVLEVVTGRHALLG 585
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,053,847
Number of Sequences: 37544
Number of extensions: 208940
Number of successful extensions: 583
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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