Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N08
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    27   1.4  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   4.3  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   7.5  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   9.9  

>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 175 FYNVLCAMKYLQVKFSNVMK-VIMCVTSVKFVLMCALSAEHYSLGPEIMQW 324
           FY++        ++F + +  +I C TSV  + MC++ +  +S   E + W
Sbjct: 214 FYSIRATHPQHFIRFIHTLSSLIKCTTSVHLICMCSVPSTLFSRDCEQIFW 264


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = +3

Query: 234 GHHVCDQCKI-RLDVCPVC 287
           GHH C+QC I R    P C
Sbjct: 270 GHHFCEQCAITRYRKTPTC 288


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = +3

Query: 189 VCYEIPSGQIFQCNEG---HHVCDQC 257
           +CYEI SG  F  N G   H++  +C
Sbjct: 488 ICYEISSGLAFLHNSGIAHHNLTTEC 513


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 201 IPSGQIFQCNEGHHVCDQCKIRLDVCPVCRA 293
           +P   I  C   HH   Q K+R  V  VC +
Sbjct: 699 VPLASIAACGAVHHYLVQNKLRSRVALVCES 729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,830,167
Number of Sequences: 5004
Number of extensions: 35580
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)