Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_N08
(464 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509... 46 2e-05
02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688 46 2e-05
05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118 44 6e-05
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251 44 6e-05
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242 43 1e-04
05_01_0380 + 2978256-2979284 42 2e-04
05_01_0379 + 2975701-2976831 42 3e-04
06_02_0097 + 11710560-11710859,11712605-11713270 40 7e-04
01_01_0147 - 1332752-1333447,1333557-1333739 39 0.002
05_01_0382 + 2985526-2986659 39 0.002
02_02_0521 - 11156594-11156956,11157097-11157483,11158327-111583... 34 0.049
01_06_0794 + 32050413-32050523,32050663-32051391 33 0.11
05_01_0381 + 2981762-2982075,2982302-2982658,2982752-2982800 32 0.26
03_05_1059 - 30020877-30021539,30022367-30022375 31 0.46
04_03_0908 + 20743436-20744018,20744128-20744168,20744320-207445... 29 2.4
07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392 28 3.2
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124... 28 3.2
07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809... 28 4.3
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501... 28 4.3
11_06_0010 + 19235419-19236450 27 5.6
06_01_0648 + 4689755-4690693 27 5.6
02_01_0238 - 1576211-1576759,1577315-1577664,1578684-1578816 27 5.6
04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959 27 9.8
>07_03_1564 +
27749899-27750166,27750431-27750507,27750923-27750950,
27751117-27751261,27751351-27751429,27751515-27751633,
27751732-27752073,27754807-27754896,27755730-27755955,
27756398-27756784,27757176-27757496
Length = 693
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 180 QCPVCYEIPSGQIFQCNEGHHVCDQCKIRL-DVCPVCRALFFGTRNYAMEELIANV 344
+CPVC I QC+ GH +C CK R+ + CP CR R A+E++ A++
Sbjct: 444 ECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASL 499
>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
Length = 308
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 180 QCPVCYEIPSGQIFQCNEGHHVCDQCKIRLD-VCPVCRALFFGTRNYAMEELIANVR 347
+CPVC I QC GH +C CK R++ CP CR R A+E++ +++
Sbjct: 59 ECPVCTNSMRPPILQCPNGHTICSNCKHRVENHCPTCRQELGNIRCLALEKVAESLQ 115
>05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118
Length = 361
Score = 44.0 bits (99), Expect = 6e-05
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 180 QCPVCYEIPSGQIFQCNEGHHVCDQCKIRL-DVCPVCRALFFGTRNYAMEEL 332
+CPVC I QC GH +C CK R+ + CP CR R A+E++
Sbjct: 99 ECPVCTNSMFPPIHQCQNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKV 150
>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
Length = 347
Score = 44.0 bits (99), Expect = 6e-05
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 180 QCPVCYEIPSGQIFQCNEGHHVCDQCKIRL-DVCPVCRALFFGTRNYAMEEL 332
+CPVC I QC GH +C CK R+ + CP CR R A+E++
Sbjct: 85 ECPVCTNSMYPPIHQCQNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKV 136
>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
Length = 417
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 183 CPVCYEIPSGQIFQCNEGHHVCDQCKIRLDVCPVCRA-LFFGT---RNYAMEELIANVRK 350
CPVC++I +FQC+ GH VC C+ L C + FGT R AME ++ +V
Sbjct: 39 CPVCFQILRPPVFQCDLGHLVCSPCRDNLPAGGKCPSPSCFGTPSVRCVAMERVVNSVEV 98
Query: 351 LRAF 362
A+
Sbjct: 99 ACAY 102
>05_01_0380 + 2978256-2979284
Length = 342
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = +3
Query: 180 QCPVCYEIPSGQIFQCNEGHHVCDQCKIRL---DVCPVCRALFFG---TRNYAMEELIAN 341
+C VC+ IFQC GH VC C+ +L C VCR G R YA+E L+
Sbjct: 74 ECGVCFLPLRPPIFQCEVGHVVCSPCRDKLAPAGRCHVCRVAVAGGEYRRCYALERLVDA 133
Query: 342 VR 347
+R
Sbjct: 134 IR 135
>05_01_0379 + 2975701-2976831
Length = 376
Score = 41.5 bits (93), Expect = 3e-04
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = +3
Query: 180 QCPVCYEIPSGQIFQCNEGHHVCDQCKIRL---DVCPVCRALFFG---TRNYAMEELIAN 341
+C VC+ + IFQC GH VC C+ L C VCR G R YA+E L+
Sbjct: 124 ECGVCFLLLRPPIFQCEVGHVVCAPCRDTLAPAGRCYVCRVAVAGGEYRRCYALERLVDA 183
Query: 342 VR 347
+R
Sbjct: 184 IR 185
>06_02_0097 + 11710560-11710859,11712605-11713270
Length = 321
Score = 40.3 bits (90), Expect = 7e-04
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 183 CPVCYEIPSGQIFQCNEGHHVCDQCKIRL-DVCPVCRALFFGTRNYAMEELIANVR 347
C +C+E ++QC GH C C +L + C +C RN A+E+++ +++
Sbjct: 87 CSICFESLRPPLYQCQNGHVACFSCWSKLSNKCHICSRDAKFARNIALEKIVESIK 142
>01_01_0147 - 1332752-1333447,1333557-1333739
Length = 292
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 180 QCPVCYEIPSGQIFQCNEGHHVCDQCKIRLD-VCPVCRALFFGTRNYAMEELIA 338
+CP+C+ +++ C GH C C +++ +CP C R +E+++A
Sbjct: 47 ECPICFVPFEDRVYMCKNGHAACGSCYAKMNTMCPCCIEPIGNIRCRPLEKVLA 100
>05_01_0382 + 2985526-2986659
Length = 377
Score = 38.7 bits (86), Expect = 0.002
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = +3
Query: 180 QCPVCYEIPSGQIFQCNEGHHVCDQCKIRL---DVCPVCRALFFG---TRNYAMEELIAN 341
+C VC IFQC GH VC C+ +L C VCRA G R +A+E L+
Sbjct: 125 ECGVCCLPLRPPIFQCEVGHVVCAPCRDKLAPAGRCHVCRAAVAGGEYRRCHALERLVDA 184
Query: 342 VR 347
+R
Sbjct: 185 IR 186
>02_02_0521 -
11156594-11156956,11157097-11157483,11158327-11158383,
11159671-11159970
Length = 368
Score = 34.3 bits (75), Expect = 0.049
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 216 IFQCNEGHHVCDQCKIRL-DVCPVCRALFFGTRNYAMEEL 332
+ +C GH +C CK R+ + CP CR R A+E++
Sbjct: 117 LLECQNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKV 156
>01_06_0794 + 32050413-32050523,32050663-32051391
Length = 279
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +3
Query: 183 CPVCYEIPSGQIFQCNEGHHVCDQCKIRL---DVCPVCRALFFGTRNYAMEELIANV 344
C VC + QC GH +C C +L + C VC R +A+E+++ ++
Sbjct: 24 CTVCCHPLKPPVLQCGVGHVICSSCHGKLPDKNRCHVCAMDTAYNRCFAVEQILRSI 80
>05_01_0381 + 2981762-2982075,2982302-2982658,2982752-2982800
Length = 239
Score = 31.9 bits (69), Expect = 0.26
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 180 QCPVCYEIPSGQIFQCNEGHHVCDQCKIRL 269
+C VC +FQC +GH VC C+ +L
Sbjct: 67 ECGVCRLPLRPPVFQCEDGHVVCSPCRDKL 96
>03_05_1059 - 30020877-30021539,30022367-30022375
Length = 223
Score = 31.1 bits (67), Expect = 0.46
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 234 GH-HVCDQCKIRLDVCPVCRALFFGTRN 314
GH +C +C R DVCP+CR+ T N
Sbjct: 47 GHASLCAECSQRCDVCPICRSPIPDTGN 74
>04_03_0908 +
20743436-20744018,20744128-20744168,20744320-20744588,
20744793-20744832
Length = 310
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 222 QCNEGHHV-C-DQCKIRLDVCPVCRALFFG 305
+CN G HV C D+ + CP CR FG
Sbjct: 134 KCNHGFHVRCIDRWLLARSTCPTCRQSLFG 163
>07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392
Length = 313
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = +3
Query: 180 QCPVCYEIPSGQIFQCNEGHHVCDQC---KIRLDVCPVCRALF 299
QCP + I C + H Q ++ +DVCP C F
Sbjct: 251 QCPARFSTVGALIEHCEKSHQSNSQSSRSRVTVDVCPKCSKAF 293
>01_01_0136 +
1237623-1237820,1238313-1239001,1239978-1240308,
1240614-1241351
Length = 651
Score = 28.3 bits (60), Expect = 3.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 183 CPVCYEIPSGQIFQCNEGHHVCDQCK 260
C C + +F+C+E H VC C+
Sbjct: 393 CHACLQPLKPPVFKCDEAHIVCSGCR 418
>07_03_1696 - 28779455-28779733,28779813-28780074,28780805-28780956,
28781765-28781961,28782258-28782462,28782737-28782982,
28783603-28783719,28784206-28784397,28784480-28784693,
28784835-28784926,28784952-28785001,28785494-28785812,
28785908-28786068,28786407-28786650,28787212-28787467,
28787634-28787834,28788568-28788910,28789003-28789064,
28789645-28789851,28790170-28790978
Length = 1535
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = +3
Query: 183 CPVCYE--IPSGQIFQCNEGHHVCDQC 257
CP+C E +FQC GH VC +C
Sbjct: 1216 CPICQEKIFDQKMVFQC--GHFVCCKC 1240
>02_03_0412 -
18749430-18749587,18749696-18749857,18750062-18750194,
18751640-18751744,18751818-18751935,18752232-18752320,
18752407-18753660,18753785-18753831,18754285-18754339,
18754783-18754884
Length = 740
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 180 QCPVCYEIP-SGQIFQCNEGHHVCDQCKIR 266
QCP+C E P QI C GH C C +R
Sbjct: 231 QCPICLESPLCPQITSC--GHIYCFPCILR 258
>11_06_0010 + 19235419-19236450
Length = 343
Score = 27.5 bits (58), Expect = 5.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 243 VCDQCKIRLDVCPVCRA 293
+C C+ +LD CPVC A
Sbjct: 316 LCKACEPKLDACPVCLA 332
>06_01_0648 + 4689755-4690693
Length = 312
Score = 27.5 bits (58), Expect = 5.6
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Frame = +3
Query: 114 SLRMSRRTVVKXXXXXXXXXXXQCPVCY-EIPSGQ----IFQCNEGHHV-C-DQCKIRLD 272
+LR TV +C VC E+ G+ + +C+ G HV C D D
Sbjct: 80 ALRALPVTVYAKPAAARGEEALECAVCLSEVADGEKVRMLPKCDHGFHVECIDMWFHSHD 139
Query: 273 VCPVCRA 293
CP+CRA
Sbjct: 140 TCPLCRA 146
>02_01_0238 - 1576211-1576759,1577315-1577664,1578684-1578816
Length = 343
Score = 27.5 bits (58), Expect = 5.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 243 VCDQCKIRLDVCPVCR 290
+C C+ DVCPVCR
Sbjct: 316 LCADCEKNADVCPVCR 331
>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
Length = 849
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +2
Query: 278 PCLPSTILWDPKLCNGRTHC*CQKTESF*IR--WD 376
PC PS +CNG + C ESF ++ WD
Sbjct: 341 PCTPSATCGPFTICNGNSTQTCDCMESFSVKSLWD 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,307,259
Number of Sequences: 37544
Number of extensions: 214348
Number of successful extensions: 506
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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