Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_N07
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 207 6e-55
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 113 1e-26
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 108 4e-25
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 103 1e-23
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 5e-11
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 60 2e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 54 1e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 43 2e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.058
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 27 1.6
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 26 2.2
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 26 2.9
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 26 2.9
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 3.8
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 5.0
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 5.0
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 6.7
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 8.5
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c... 24 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 207 bits (505), Expect = 6e-55
Identities = 94/111 (84%), Positives = 99/111 (89%)
Frame = +3
Query: 102 SLIVDDSSQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN 281
S++ G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYN
Sbjct: 33 SIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYN 92
Query: 282 ELRVAPEEHPVLLTEAPLKPKANREKMTQIMFETFNTPGMYVAIQAVLSLY 434
ELRVAPEEHP LLTEAPL PK+NREKMTQI+FETFN P YVAIQAVLSLY
Sbjct: 93 ELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLY 143
Score = 31.5 bits (68), Expect = 0.058
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 17 MCDKIAALVVDMDP-VCQAGFAGTTLP-ARFPHRRRLVTGRHGRHG 148
M ++IAALV+D +C+AGFAG P A FP + GR HG
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPS----IVGRPRHHG 42
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 113 bits (271), Expect = 1e-26
Identities = 48/94 (51%), Positives = 71/94 (75%)
Frame = +3
Query: 153 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 332
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 333 LKPKANREKMTQIMFETFNTPGMYVAIQAVLSLY 434
+ P ANREKM + MFE + G+YVAIQAVLSLY
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLY 143
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 108 bits (259), Expect = 4e-25
Identities = 49/102 (48%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Frame = +3
Query: 132 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEH 308
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 309 PVLLTEAPLKPKANREKMTQIMFETFNTPGMYVAIQAVLSLY 434
P+LLTE PL N+EK+ + +ET N P + ++Q VL+LY
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALY 148
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 103 bits (247), Expect = 1e-23
Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Frame = +3
Query: 156 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 332
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 333 LKPKANREKMTQIMFETFNTPGMYVAIQAVLSL 431
L P NRE +IMFE+FN G+Y+A+QAVL+L
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLAL 165
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.7 bits (143), Expect = 5e-11
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Frame = +3
Query: 144 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 320
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 321 TEAPLKPKANREKMTQIMFETFNTPGMYVAIQAVLSLY 434
TE P R MT+++FE +N P + I + S Y
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFY 158
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 59.7 bits (138), Expect = 2e-10
Identities = 27/79 (34%), Positives = 41/79 (51%)
Frame = +3
Query: 198 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLKPKANREKMTQIMF 377
+ +K I +G V NWD +W + +L+ P EHP+L+TE P NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 378 ETFNTPGMYVAIQAVLSLY 434
E+ P Y+A Q + +
Sbjct: 123 ESLRCPATYLAKQETCAAF 141
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 53.6 bits (123), Expect = 1e-08
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Frame = +3
Query: 120 SSQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV 293
S GV + ++ YV DE Q I + +K +GI+ +W+ W +L+V
Sbjct: 38 SYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQV 97
Query: 294 APEEHPVLLTEAPLKPKANREKMTQIMFETFNTPGMYVAIQAV 422
P E+ +++TE P++ R+++ + FE + P Y+ QAV
Sbjct: 98 NPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAV 140
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 42.7 bits (96), Expect = 2e-05
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +3
Query: 213 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLKPKANREKMTQIMFE 380
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 381 TFNTPGMYVAIQAVLSLY 434
PG +A + ++ LY
Sbjct: 172 ECQVPGFTIAYEPLMGLY 189
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.058
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +3
Query: 273 FYNELRVAPEEHPVLLTE--APLKPKANREKMTQIMFETFNTP---GMYVAIQ 416
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 1.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 320 HRSSPQAQSQQREDDTDYVRDLQHTRHVRSYPGRALTV 433
H S+ + +ED+T D+ R++R +PG TV
Sbjct: 78 HHSNSLIHASTKEDNTVRYLDVVTNRYLRYFPGHKQTV 115
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 2.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 120 SSQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 218
S +M+G +Y+G AQ KR +LT + I
Sbjct: 161 SQYAIMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 2.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 404 VHAGCVEGLEHNLCHLLSVGFGLEGSFGEQDWVLL 300
+ AG VEG L LS+ FG+ +WV L
Sbjct: 324 IRAGLVEGRMSQLTKTLSIHRSSYRVFGKHEWVAL 358
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 2.9
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = -3
Query: 368 LCHLLSVGFGLEGSFGEQDWVLLGSYTQLIVEGVMP-DLLHIVPVGDDAVFDGVFECEDT 192
L ++ VG +G+F W +LGS M D +VPV D + F + E
Sbjct: 96 LVEVVDVGDQFKGTFSPGQWAILGSVNLGSWRTEMNIDGRSLVPV-DKSAFPSIAEAATL 154
Query: 191 SL----ALCLITYV 162
S+ A CL+ +V
Sbjct: 155 SVNPCTAYCLLQHV 168
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 315 LLTEAPLKPKANREKMTQIMFETFN 389
+L APL + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 194 YPHTQIPHRTRHRHQLGRYGEDLASHLLQ*AACSSRG 304
Y + + PH+ +H LG YG ++ L C +G
Sbjct: 307 YGNPEHPHQRKHAFDLGEYGAGYLTNPLA-LGCDCKG 342
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 5.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 309 GAPRELHAAHCRRCDARSSP 250
G PRE HCR C+ P
Sbjct: 52 GIPRESTVNHCRECERYMQP 71
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 24.6 bits (51), Expect = 6.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 185 QERYPHTQIPHRTRHRH 235
Q +PHT+ PH H H
Sbjct: 167 QHHHPHTRPPHHPPHPH 183
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.8 bits (44), Expect(2) = 8.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 195 ILTLKYPIEHGIVTN 239
I+T YP HGIV+N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 8.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 234 TNWDDMEKIWHHTFYNELRVAPEEHP 311
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 51 WIRYVKPVSRERRSPPGSLIVDDSSQGVMV 140
W RYVK + + S L VD+ S ++V
Sbjct: 257 WTRYVKKIEMKAVSIEQCLRVDELSNSILV 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,943,196
Number of Sequences: 5004
Number of extensions: 40943
Number of successful extensions: 124
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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