Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N07
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   2.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   4.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   4.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.0  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 287 QLIVEGVMPDLLHIV 243
           Q +V+ V PD+LH++
Sbjct: 23  QTVVDKVPPDMLHLI 37


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 125 TGRHGRHGSEGL 160
           TG HG HG  GL
Sbjct: 132 TGLHGLHGLHGL 143


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 127 CDESSTMREPGGERRSRETGLTYRIHVYDQRGNFVA 20
           CD +  M E   + + R TGL  +I V    G  VA
Sbjct: 493 CDMALDMVEAITDLKDRSTGLHLQIRVGVHSGAVVA 528


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2
          protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 82 SRETGLTYRIHVYDQRGNFVAHW 14
          SR + +  +  +YD+ G    HW
Sbjct: 4  SRSSEINPKEGLYDEGGKHTVHW 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,126
Number of Sequences: 438
Number of extensions: 2945
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)