Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N06
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   198   5e-52
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    31   0.095
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    29   0.67 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.0  
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    27   2.7  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   2.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.6  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    25   6.2  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   8.3  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  198 bits (483), Expect = 5e-52
 Identities = 97/185 (52%), Positives = 134/185 (72%), Gaps = 2/185 (1%)
 Frame = +3

Query: 30  KILKAGAIEPDTFETSISQALVELETNS-DLKAQLRELYITNAKEIELHN-KKSIIIYVP 203
           KI+K  + +P   +  ++Q L +LE++S D+  +LR L IT+A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 204 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 383
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 384 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHNVDTFQSVYKKLTVREV 563
           ++AILED+VFP EI+GKR R   DG + IKV LD     T+++ + +F SVY KLT + V
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNV 183

Query: 564 TFEFP 578
           TFEFP
Sbjct: 184 TFEFP 188


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 31.5 bits (68), Expect = 0.095
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +3

Query: 366 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHNVDTF-QSVYK 542
           ++L + YD + EDL   ++ +GK+  ++   ++L  VHL  +   TIE  +  F Q+V  
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621

Query: 543 KLTVREVTFEFP 578
           + T    +F+ P
Sbjct: 622 QSTKSTASFQLP 633


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +3

Query: 279  HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 458
            H V V D+ +   P       N+Q   R  +L+ + D + +  V   E V  R   K  G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650

Query: 459  SQLIKVHLD-KNQQTTIEHNV 518
            S ++   LD K+ Q   EH +
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 36   LKAGA-IEPDTFETSISQALVE--LETNSDLKAQLRELY 143
            +KA A I+PD FE +I Q L +     N  LK ++ +LY
Sbjct: 2123 VKANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLY 2161


>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 60  DTFETSISQALVELETNSDLKAQLRELYITNAKEIEL 170
           +T+E  I + L++L + S++  Q+  ++I    E+E+
Sbjct: 78  ETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEV 114


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 192 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 284
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +3

Query: 33   ILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITNAKEIEL 170
            I + G +  +TF+  +SQA ++    + L   +RE ++ +  E +L
Sbjct: 3170 ISRLGVVSKNTFQLPMSQANIQRFAENVLPVSVREAFLRDFVETKL 3215


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 27/105 (25%), Positives = 48/105 (45%)
 Frame = +3

Query: 15  FKMSTKILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITNAKEIELHNKKSIII 194
           FK STK+L A  +  D+ E       VE+E   ++K   RE Y T+   + +  +     
Sbjct: 275 FKTSTKLLSA-KVNGDSVE-------VEIE---NMKNNKRETYQTDVLLVAI-GRVPYTE 322

Query: 195 YVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHK 329
            + + KL        R++ + E + +  H+  +GD  + P  +HK
Sbjct: 323 GLGLDKLGISMDKSNRVIMDSEYRTNIPHIRVIGDATLGPMLAHK 367


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 312 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 437
           P  S + R  N+++  RSR   S + + LED+++    V  R
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,194
Number of Sequences: 5004
Number of extensions: 52681
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)