Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N05
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        30   0.24 
SPCC622.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        29   0.55 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   5.1  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   6.7  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    25   6.7  

>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 391 IVSKHYCGIHCLVRMGNRGVKVYVICIYLYGNVCIGMCMCLCDCM 257
           +  K +C   CL R   RG  ++++C  LY  VC    +C   C+
Sbjct: 6   LYQKRFCLFVCLERFQWRGA-IFLVCYPLYCVVCFVSVLCRLYCI 49


>SPCC622.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 70  IIKTFISFIANCNLFVIIFCIL 5
           +  +FISFI +C LF+++F  +
Sbjct: 43  LFMSFISFIVSCRLFILVFTFI 64


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/53 (28%), Positives = 20/53 (37%)
 Frame = +1

Query: 184 YESHSXERYKQYTYIYRHNHPYTRAYNHTNTCTCQYTRYHTNIYKLHKPSPLY 342
           Y+S   E Y  Y Y       Y   Y   +T +    +Y T   K  +PS  Y
Sbjct: 54  YDSMYGEGYNGYDYPTGVTESYGDEYTPVDTASSGINQYSTEKGKFTRPSDEY 106


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 296 VTIQIYTNYINL-HPSISHSDETMDTTVM 379
           VT+Q+Y  +IN+ HPS++ S  T+ T  M
Sbjct: 312 VTLQVYC-FINVNHPSLNRSPFTLATNSM 339


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 302 IQIYTNYINLHPSISHSDETMDTTVMFGDD 391
           +Q Y  Y+N  P+  H   T  +T++ GD+
Sbjct: 23  VQEYYTYLNKEPNRLHCFYTKKSTLIHGDE 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,531
Number of Sequences: 5004
Number of extensions: 44976
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)