Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N05
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0432 - 15861997-15862096,15862449-15862519,15862612-158627...    30   1.3  
04_03_0428 - 15820169-15820236,15820296-15820367,15820450-158205...    30   1.3  
04_03_0418 - 15686775-15686842,15686902-15686973,15687056-156871...    30   1.3  
03_03_0229 - 15612829-15612897,15612982-15613083,15613503-156135...    29   1.7  
03_02_0822 + 11530250-11530442,11530728-11531129,11531430-115318...    29   2.9  
01_06_1448 - 37434159-37434242,37434875-37434968,37435077-374352...    29   2.9  
11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764     28   3.9  
01_06_0193 - 27359575-27361962                                         28   5.1  

>04_03_0432 -
           15861997-15862096,15862449-15862519,15862612-15862774,
           15865311-15865535,15866156-15866403,15866489-15866618,
           15866716-15866975
          Length = 398

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +2

Query: 341 ISHSDETMDTTVMFGDDRVTPMATFSSSGKLRVNLS*CISSYHGEIIY-IPNVNEP 505
           +  S++ +D  + FG    + ++  S++GK++   + C+ + +G  I+ I NV +P
Sbjct: 222 LGSSNQALDGIIGFGQSNTSMLSQLSAAGKVKKIFAHCLDTINGGGIFAIGNVVQP 277


>04_03_0428 -
           15820169-15820236,15820296-15820367,15820450-15820519,
           15824222-15824312,15825023-15825093,15825176-15825341,
           15826169-15826393,15829075-15829307,15829464-15829618,
           15829636-15829855
          Length = 456

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 338 SISHSDETMDTTVMFGDDRVTPMATFSSSGKLRVNLS*CISSYHGEIIY-IPNVNEP 505
           S+++S   +D  + FG+   T ++  +++GK +   S C+ S +G  I+ I  V EP
Sbjct: 211 SLNNSAVAIDGIIGFGNSNQTALSQLAAAGKTKKIFSHCLDSTNGGGIFAIGEVVEP 267


>04_03_0418 -
           15686775-15686842,15686902-15686973,15687056-15687125,
           15690828-15690918,15691629-15691699,15691782-15691947,
           15692775-15692999,15695681-15695913,15696070-15696224,
           15696242-15696461
          Length = 456

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 338 SISHSDETMDTTVMFGDDRVTPMATFSSSGKLRVNLS*CISSYHGEIIY-IPNVNEP 505
           S+++S   +D  + FG+   T ++  +++GK +   S C+ S +G  I+ I  V EP
Sbjct: 211 SLNNSAVAIDGIIGFGNSNQTALSQLAAAGKTKKIFSHCLDSTNGGGIFAIGEVVEP 267


>03_03_0229 -
           15612829-15612897,15612982-15613083,15613503-15613553,
           15613637-15613706,15613816-15613984,15614217-15614326,
           15614443-15614510,15615412-15615480,15616649-15616692,
           15616803-15617050,15617620-15617633
          Length = 337

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 169 LQILTYESHSXERYKQYTYIYRHNHPYTRAYNHTNTCTCQYTRY 300
           L ++  +S S  ++ Q    +RH H       HT +C+   TRY
Sbjct: 173 LYLIDSKSDSVVKHVQLHDWHRHGHDANNGRQHTGSCSSPLTRY 216


>03_02_0822 +
           11530250-11530442,11530728-11531129,11531430-11531878,
           11533568-11533744
          Length = 406

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 277 MCLCDCMRVCMGDCVCKCM 221
           MC+C C   C+G+  C C+
Sbjct: 236 MCVCKCTSSCLGEDNCSCL 254


>01_06_1448 -
           37434159-37434242,37434875-37434968,37435077-37435250,
           37435536-37435627,37435947-37436056,37437274-37437349,
           37437445-37437537,37437617-37437817
          Length = 307

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 373 SNVWRRSSNADGHVLQQW 426
           S VWRR + A GHV+ +W
Sbjct: 19  SRVWRRPAAAGGHVIVEW 36


>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
          Length = 515

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = -2

Query: 268 CDCMRVCMGDCVCK-CMCIVCN 206
           CDC   C     C  CMC+VCN
Sbjct: 178 CDCDVCCCRRGFCNLCMCVVCN 199


>01_06_0193 - 27359575-27361962
          Length = 795

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 265 DCMRVCMGDCVC 230
           +CMR+CM  CVC
Sbjct: 360 ECMRICMDSCVC 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,241,426
Number of Sequences: 37544
Number of extensions: 270221
Number of successful extensions: 668
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)