Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N04
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    27   2.8  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    26   3.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   3.7  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    26   4.9  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   8.6  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    25   8.6  

>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 190 SVPQNKVVCSFCQYFLHYLQVELSDSRVEAKVTAAVNAACGVLPA 324
           +VP  + V  F +  + Y+ + L D  V  ++ A    +C +L A
Sbjct: 561 NVPYYEEVIDFVKKLIEYIDIHLQDLGVRYEIAAEHAHSCSILVA 605


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 513 FNGKQTERTVGLVRVNR-DVFHFLHLWANADGWANARGVDLLDEE 382
           F+ KQ   ++G +   R +V +F + W N D W   R  + LD++
Sbjct: 197 FSKKQPVPSLGTIESTRAEVDNFYNFWYNFDSW---RSFEYLDKD 238


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 1/121 (0%)
 Frame = -3

Query: 476 SELIVTCFTSSTCGQMPMAGQTLEGSISWTRSAITAGPY*STNSLHSAFTLAGNTPHXXX 297
           S   ++  T  T   +     T   S+ +T + +T+ P  +TN   S      +TP    
Sbjct: 512 SNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSS 571

Query: 296 XXXXXXASTLESLSSTCR*CRKYWQNEQTTLFCGTE-TNIRSMGSAGTIPGSGSASPITR 120
                 ++ + S   T   C        + L+  T  T+  S  S+ T     S +PIT 
Sbjct: 572 NYTISSSTPVTSTPVTTTNC----TTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPITG 627

Query: 119 T 117
           T
Sbjct: 628 T 628



 Score = 25.8 bits (54), Expect = 4.9
 Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 4/143 (2%)
 Frame = -3

Query: 533 LSVASSCSTANKQSGQLD*SELIVTCFTSSTCGQMPMAGQ--TLEGSISWTRSAITAGPY 360
           LS ++SC+T+       + S   VT     T    P+     T   S+ +T + +T+ P 
Sbjct: 387 LSTSTSCTTSTSIPPTGN-STTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPL 445

Query: 359 *STNSLHSAFTLAGNTPHXXXXXXXXXASTLESLSSTCR*CRKYWQNEQTTLFCGTETNI 180
            +TN   S      +TP           +T  S+  T            TT  C T T++
Sbjct: 446 ATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT---STPVTSTPLTTTNCTTSTSV 502

Query: 179 RSMGSAGTIPG--SGSASPITRT 117
               +  T       S++P+T T
Sbjct: 503 PYTSTPVTSSNYTISSSTPVTST 525


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 133 EAEPEPGIVPALPIERMFVSVPQNKVVCSFCQYFLHYLQVELSDSRVEAKVTA 291
           EA  E  IV   P+   F+SVP+     + C Y    ++  L  ++   K +A
Sbjct: 127 EASDEYMIVDNNPLLNKFISVPKEMNQLNCCAYLAGIIEGFLDSAQFPCKASA 179


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 71  GSRGSTCALSLRSKRMSA*SVKRNPNRESYPHYPSSEC 184
           GS   TC   +  +  +A +V R P   + PH P   C
Sbjct: 168 GSAIETCTAVVTGQVKNAFAVVRPPGHHAEPHKPGGFC 205


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 304 ACGVLPASVNAECKEFVDQYGPAVIA 381
           ACG   A+  A+  EF  Q+G  VIA
Sbjct: 344 ACGRPQATAIAQVAEFASQFGIGVIA 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,304
Number of Sequences: 5004
Number of extensions: 39887
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)