Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_N04
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211... 56 2e-08
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912... 46 3e-05
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138... 43 2e-04
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 39 0.004
12_01_0076 + 627796-627877,628706-628944,629129-629326,629415-62... 37 0.014
01_05_0795 + 25287449-25287967,25288078-25288138,25288640-252887... 37 0.014
11_01_0075 + 591537-591618,592410-592648,592840-593037,593129-59... 36 0.019
01_01_0462 + 3422352-3422439,3423057-3423241,3423333-3423530,342... 36 0.033
02_05_0784 + 31726453-31726563,31726820-31726897,31727307-317278... 30 1.6
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 27 2.1
11_01_0422 + 3246528-3248606 29 2.9
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 29 3.8
>05_01_0273 +
2115257-2115589,2115706-2115766,2115876-2115970,
2116072-2116184,2116278-2116551,2116923-2117036,
2117169-2117233,2117325-2117466,2117547-2117666,
2118153-2118241,2118349-2118433
Length = 496
Score = 56.0 bits (129), Expect = 2e-08
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Frame = +1
Query: 283 VTAAVNAACGVLPASVNAECKEFVDQYGPAVIALLVQEIDPSSVCPAIGIC--------- 435
+ A VN A G ++ ECKE V +YG ++ LL+ + DP VC +G+C
Sbjct: 294 IVAQVNHAIGA-EGIISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLCMFDGKRSVS 352
Query: 436 PQVEE-VKHVTINSD*SNCPLCLFAVEQLEATLKNNRTEANIRKALEGLCTHL 591
+E V + SD + C +C AV +E L+ N+T+ I LC L
Sbjct: 353 NGIESVVDKENLGSD-AMCSVCEMAVVWIENQLRENKTKELILNYANQLCERL 404
>01_02_0039 -
10490522-10490606,10490674-10490810,10491107-10491248,
10491355-10491419,10491528-10491641,10491846-10492119,
10492215-10492327,10492405-10492499,10492602-10492662,
10492774-10493103
Length = 471
Score = 45.6 bits (103), Expect = 3e-05
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Frame = +1
Query: 283 VTAAVNAACGVLPASVNAECKEFVDQYGPAVIALLVQEIDPSSVCPAIGICP-------- 438
+ A +N A G V+ ECK+ V YG ++ +L+ + P +C IG+C
Sbjct: 293 IVAQINHAIGA-EGIVSMECKQVVRDYGDMILEMLIAQASPMKLCSQIGLCAFDGTRSVR 351
Query: 439 -QVEE-VKHVTINSD*SNCPLCLFAVEQLEATLKNNRTEANIRKALEGLCTHLSQK 600
+E V + SD S C C AV ++ L++N+T I + + L Q+
Sbjct: 352 NNIESVVDKEKVGSDLS-CTACEMAVVWIQNQLRHNQTRELILQYADQYVVKLEQQ 406
>05_07_0145 +
28012268-28012624,28012734-28012794,28013758-28013852,
28013944-28014056,28014436-28014604,28014677-28014716,
28014797-28014861,28015485-28015598,28015687-28015751,
28015927-28016083,28016167-28016286,28016447-28016535,
28016631-28016715
Length = 509
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 328 VNAECKEFVDQYGPAVIALLVQEIDPSSVCPAIGIC 435
V+ ECK V QYG ++ LL+ E PS +C +G+C
Sbjct: 316 VSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLC 351
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 328 VNAECKEFVDQYGPAVIALLVQEIDPSSVCPAIGIC 435
V+ ECK V QYG ++ L E P+ VC ++G+C
Sbjct: 326 VSQECKAVVSQYGQQILDQLRAETKPAKVCSSVGLC 361
>12_01_0076 +
627796-627877,628706-628944,629129-629326,629415-629474,
629596-629739,631700-631864,632636-632734,633114-633182,
633274-633370,633994-634085,635021-635152,635446-635526,
636284-636400,636497-636598
Length = 558
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/83 (22%), Positives = 37/83 (44%)
Frame = +1
Query: 187 VSVPQNKVVCSFCQYFLHYLQVELSDSRVEAKVTAAVNAACGVLPASVNAECKEFVDQYG 366
+S +++ C FC + + + +L D E ++ + C + +CK V QY
Sbjct: 144 LSAMKSESTCVFCHHIIDEIMSKLKDPDAEFEIIQLLLKECNKIEGH-QQQCKRMVLQYV 202
Query: 367 PAVIALLVQEIDPSSVCPAIGIC 435
P V+ + ++ + VC I C
Sbjct: 203 PLVLVNGEKFLEKNDVCAMIQAC 225
>01_05_0795 +
25287449-25287967,25288078-25288138,25288640-25288734,
25288827-25288939,25289480-25289648,25289777-25289816,
25289906-25289970,25290150-25290263,25290398-25290462,
25290572-25290725,25290798-25290914,25292489-25292545
Length = 522
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 289 AAVNAACGVLPASVNAECKEFVDQYGPAVIALLVQEIDPSSVCPAIGIC 435
A ++A G + N ECK+ V ++G ++ LL + P+ VC IG+C
Sbjct: 358 AQIHAHIGATGVA-NEECKQVVARHGHEMLELLQDKTPPAQVCSKIGLC 405
>11_01_0075 +
591537-591618,592410-592648,592840-593037,593129-593188,
593313-593456,594655-594819,595611-595709,596057-596125,
596216-596312,596922-597013,597085-597255,598053-598184,
598479-598559,599131-599247,599344-599433
Length = 611
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/83 (22%), Positives = 37/83 (44%)
Frame = +1
Query: 187 VSVPQNKVVCSFCQYFLHYLQVELSDSRVEAKVTAAVNAACGVLPASVNAECKEFVDQYG 366
+S +++ C FC + + + +L D E ++ + C + +CK V QY
Sbjct: 144 LSAVKSESTCLFCHHIIDEITSKLKDPDAEFEIIQLLLKECNKIEGH-QQQCKRMVLQYV 202
Query: 367 PAVIALLVQEIDPSSVCPAIGIC 435
P V+ + ++ + VC I C
Sbjct: 203 PLVLVNGEKFLEKNDVCAMIQAC 225
>01_01_0462 +
3422352-3422439,3423057-3423241,3423333-3423530,
3423617-3423676,3424022-3424171
Length = 226
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +1
Query: 193 VPQNKVVCSFCQYFLHYLQVELSDSRVEAKVTAAVNAACGVLPASVNAECKEFVDQYGPA 372
+P C C + L + + L D ++ ++ AC V +CK+ V +Y P
Sbjct: 130 LPSRGDTCGICHHVLVEVLIMLKDPDMQLEIVEIFLKACSKADNYVQ-QCKKMVLEYTPL 188
Query: 373 VIALLVQEIDPSSVCPAIGIC 435
++ + ++ + VC I C
Sbjct: 189 ILVKSQKFLETTDVCSTIHAC 209
>02_05_0784 +
31726453-31726563,31726820-31726897,31727307-31727843,
31728225-31728305,31728394-31728457,31728738-31728825,
31728934-31729018,31729103-31729186
Length = 375
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 310 GVLPASVNAECKEFVDQYGPAVIALLVQEIDPSSVCP-AIGICPQVEE 450
G LP+S+ ++ FV VI + E +PSS P ++G+C ++E
Sbjct: 2 GYLPSSLGSKAAHFVSDL-TTVILNPISEREPSSPLPFSVGVCRDLDE 48
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 26.6 bits (56), Expect(2) = 2.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 38 HHTIFQTDRS*GSRGSTCALSLRSKRMSA*SVKRNPNRESYPH 166
H+ FQT+ S+ S A R +R + + R+P R PH
Sbjct: 174 HYMFFQTNHIPLSKNSADAAPSRRRRSAIATPPRHPRRRLAPH 216
Score = 21.4 bits (43), Expect(2) = 2.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 143 PNRESYPHYPSSEC 184
P+R PH+PS+ C
Sbjct: 244 PDRCRRPHHPSTPC 257
>11_01_0422 + 3246528-3248606
Length = 692
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/78 (23%), Positives = 30/78 (38%)
Frame = -3
Query: 335 AFTLAGNTPHXXXXXXXXXASTLESLSSTCR*CRKYWQNEQTTLFCGTETNIRSMGSAGT 156
AF A +T L + + R +FC E++IR+
Sbjct: 391 AFIAACSTTDAAADEPDTTTDALTDIKTELASVRSRLGESAAAIFCDLESSIRADAGKQP 450
Query: 155 IPGSGSASPITRTFVCFL 102
+PG G+ P+TR + +L
Sbjct: 451 VPG-GAVHPLTRYLMNYL 467
>06_03_1067 -
27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 343 KEFVDQYGPAVIALLVQEIDPSSVCPAIGICPQVEE 450
K DQ GP+V+ ++ ++C I P+VE+
Sbjct: 398 KVLPDQQGPSVVCTTIEHASEDNLCKEIAPTPKVEQ 433
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,566,105
Number of Sequences: 37544
Number of extensions: 299874
Number of successful extensions: 991
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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