Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N04
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.0  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   4.1  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   4.1  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   4.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 179  RSMGSAGTIPGSGSASP 129
            RS+GSA  IP SGS  P
Sbjct: 1843 RSVGSARNIPVSGSPEP 1859


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 274 EAKVTAAVNAACGVLPASVNAECKEFVDQ 360
           E + TA  N    VLP ++  +CK+  D+
Sbjct: 54  EGRCTAEGNELKRVLPDALATDCKKCTDK 82


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 274 EAKVTAAVNAACGVLPASVNAECKEFVDQ 360
           E + TA  N    VLP ++  +CK+  D+
Sbjct: 54  EGRCTAEGNELKRVLPDALATDCKKCTDK 82


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 274 EAKVTAAVNAACGVLPASVNAECKEFVDQ 360
           E + TA  N    VLP ++  +CK+  D+
Sbjct: 54  EGRCTAEGNELKRVLPDALATDCKKCTDK 82


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 146 NRESYPHYPSS 178
           N E+YPHY  S
Sbjct: 78  NEENYPHYQMS 88



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 394 EIDPSSVCPAIGICPQVEEVKHVTINSD*SN 486
           +++ S +CP          +KH + NSD S+
Sbjct: 205 KLEQSPLCPPAPRLTNSNSIKHESDNSDYSH 235


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 236 RKYWQNEQTTLFCGTETN 183
           R+ W+  Q TL+ GT ++
Sbjct: 43  RRRWKQYQDTLYSGTRSS 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,717
Number of Sequences: 438
Number of extensions: 2652
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)