Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N03
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   144   8e-36
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    65   8e-12
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    63   3e-11
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    43   4e-05
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   0.87 

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  144 bits (349), Expect = 8e-36
 Identities = 62/75 (82%), Positives = 72/75 (96%)
 Frame = +3

Query: 6   RAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 185
           +AVC +PP+ LKM+ATFIGNST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEGMDEMEFTE
Sbjct: 351 KAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTE 410

Query: 186 AESNMNDLVSEYQQY 230
           AESNMNDLVSEYQQY
Sbjct: 411 AESNMNDLVSEYQQY 425


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 64.9 bits (151), Expect = 8e-12
 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 8/80 (10%)
 Frame = +3

Query: 12  VCDIPPRGLK--------MAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 167
           +CD PP+ ++         A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+
Sbjct: 355 ICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGME 414

Query: 168 EMEFTEAESNMNDLVSEYQQ 227
           E EF+EA  ++  L  +Y++
Sbjct: 415 EGEFSEAREDLAALERDYEE 434


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 62.9 bits (146), Expect = 3e-11
 Identities = 24/61 (39%), Positives = 41/61 (67%)
 Frame = +3

Query: 45  AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 224
           A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y+
Sbjct: 378 AVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYE 437

Query: 225 Q 227
           +
Sbjct: 438 E 438


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
 Frame = +3

Query: 39  KMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DL 209
           +++   + N T+I  LFKR  +Q+  + +R AFL  Y  E + E +  E +S+ +   DL
Sbjct: 372 RVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADL 431

Query: 210 VSEYQ 224
           ++EY+
Sbjct: 432 INEYE 436


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 63  NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 170
           NS+ IQ L K I+   T  +R    ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,882,534
Number of Sequences: 5004
Number of extensions: 31762
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)