Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N02
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   200   2e-52
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    27   1.5  
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    26   4.5  
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    25   7.9  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    25   7.9  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  200 bits (487), Expect = 2e-52
 Identities = 94/187 (50%), Positives = 128/187 (68%)
 Frame = +1

Query: 13  YYEQFGKNLKLGIHEDSQNRSKLSDLLRYHTSASGDEACSLKEYVSRMKENQKHIYYITG 192
           +Y+ F KNLKLGIHED+ NR  L+ LLRY++  S D+  SL++Y+++M E+QK+IY+ITG
Sbjct: 412 FYDAFSKNLKLGIHEDAANRPALAKLLRYNSLNSPDDLISLEDYITKMPEHQKNIYFITG 471

Query: 193 ENRDQVANSSFVERVKKRGYEVVYMTEPIDEYVVQQMKEYDGKTLVSVTXXXXXXXXXXX 372
           E++  V NS F+E  + + ++V++M +PIDEY V Q+KE++GK LV++T           
Sbjct: 472 ESKQAVENSPFLEIFRAKKFDVLFMVDPIDEYAVTQLKEFEGKKLVNITKDGLELEETDE 531

Query: 373 XXXXXXXXXXXXXGLCKVMKNILDKKVEKVVVSNRLVESPCCIVTAQYGWSANMERIMKA 552
                           K +K IL  KVEKVVVSN++V SPC + T QYGWSANMERIMKA
Sbjct: 532 EKAAREKLEKEYEEFAKQLKTILGDKVEKVVVSNKIVGSPCLLTTGQYGWSANMERIMKA 591

Query: 553 QALRDTS 573
           QALRDTS
Sbjct: 592 QALRDTS 598


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +1

Query: 61  SQNRSKLSDLLRYHTSASGDEACSLKEYVSRMKENQKHIYY-ITGENRDQVANSSFVERV 237
           SQN S + D+ R H   +G+           + ++  H++Y    EN  Q  N S     
Sbjct: 559 SQNNSVIIDIPRSHFDNAGEVCLENLAEPDEIADDSIHLHYDAAQENSPQPVNGS----- 613

Query: 238 KKRGYEVVYMTEPIDEYVV 294
               YE+V++T   +E  +
Sbjct: 614 -SPPYELVFVTRNTEEATI 631


>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 247 GYEVVYMTEPIDE-YVVQQMKEYDGKTLVS 333
           G  +V  T P D+ YV Q  KEY GK + S
Sbjct: 27  GKLIVMGTRPTDQKYVEQLAKEYPGKVIPS 56


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 285 LINGFSHVYNLIPTLLDSFHK 223
           + N  + V  +IP LLD+FHK
Sbjct: 8   ITNLLTRVKRIIPPLLDTFHK 28


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 82  SDLLRYHTSASGDEACSLKEYVSRMKENQKHIYYITGENRDQVANSS 222
           +DL+ Y ++ + DEA  L  +     EN     ++TG +   +A SS
Sbjct: 74  NDLMLYISNNTFDEALPLDNFTITASENGLATIFVTGYSPLYIAVSS 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,606
Number of Sequences: 5004
Number of extensions: 39271
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)