Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_N01
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    27   1.8  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   5.6  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   7.4  

>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 97  PVAANEDEGKLELFSGVVIEKDASGENK 180
           P++ N+D G L+LF    +EK+  G+N+
Sbjct: 53  PISENDD-GTLDLFGDSELEKEQKGDNQ 79


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 159 RCIWRKQTQCEIRAWRTERSC*NFRRSS 242
           RCIWRK  +C   A+ +ER+   FR  S
Sbjct: 163 RCIWRKGKKCH-SAYISERTKPIFRSES 189


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 306 HHGNNLNTNASQEW 265
           HHGN  N+ ++Q W
Sbjct: 622 HHGNTYNSGSAQSW 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,577
Number of Sequences: 5004
Number of extensions: 30201
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)