Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M24
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    31   0.097
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   2.8  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   3.7  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    26   4.8  
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    25   6.4  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   6.4  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   8.5  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   8.5  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   8.5  

>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 31.5 bits (68), Expect = 0.097
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +1

Query: 208 ENGTAAEATNGTPNKSNDNGVPFKDAF--KAFSKFGDPKSDGKLITLSQSDKWMKQAKVI 381
           E    A+   G+ N SN N     D +  K    F DPKS   L+ + Q D+    AK+ 
Sbjct: 120 EGAKIAQPAIGSANASNHNDEEAYDRYIKKHNISFADPKSSENLLPILQFDELDVSAKLR 179

Query: 382 DGKK 393
           +G K
Sbjct: 180 EGLK 183


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 246 EQKQRQRRTVQGCLQSILKIR*SQVRWQTHNSI 344
           E +Q++RR VQ    S +K+  SQ+R  T+ ++
Sbjct: 874 EIRQQERRQVQLLSNSTIKMHPSQIRMMTNRNV 906


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 112  ALNILCVNMSADAEGVNSAVEQVTQDVKDVKIENGTAAEATN 237
            A++ L    + DAE  N + E+  ++V  VK ENG +    N
Sbjct: 1307 AMDTLTAVAALDAELDNMSNEKAKEEVDHVKSENGESVNEPN 1348


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 460 YQKFLDDLAKNKKVELDDFKKKLTTCGQPGITSHVTKSPAAAAAVD 597
           Y+++   + KN KV  ++FKK+       G  SH+      +  VD
Sbjct: 309 YKEYQAQVVKNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVD 354


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 206 ILTSFTSCVTCSTAELTPSASADIFT 129
           I+ + TSC  CS   LTP  S  I T
Sbjct: 181 IIPTITSCYECSLDMLTPKISYPICT 206


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 418  HFKKIKSVKIGIEDYQKFLDDLAKNKKVELDD 513
            H  KI+ ++  IED +  L D  KN+ + +DD
Sbjct: 919  HTSKIEYLEKTIEDLKLALQDELKNRNLLMDD 950


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 406 DTAIHFKKIKSVKIGIEDYQKFLDDLAK 489
           D+ +  KKI SV+  IE   +  DDL K
Sbjct: 480 DSILDLKKIDSVRTSIESPTRTADDLYK 507


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1250

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 157  VNSAVEQVTQDVKDVKIENG 216
            +N  +EQ+  D+  V+I NG
Sbjct: 1143 INPPIEQIVHDIPTVRISNG 1162


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 65  KSVYTTHTEFDLIYHKP*IYCV*ICL 142
           K++YTT+T+F+ + H+  +Y +  CL
Sbjct: 538 KAIYTTYTDFEDLDHR--LYSIKKCL 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,526
Number of Sequences: 5004
Number of extensions: 43662
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)