Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_M24
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 33 0.23
09_02_0179 - 5403985-5404356,5404375-5404446 31 0.93
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 29 2.2
08_02_0258 + 14968858-14970648 29 2.8
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 29 2.8
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 29 2.8
08_01_0512 + 4468486-4469306,4470165-4470255,4470938-4471054 29 3.8
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 28 5.0
09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,366... 28 6.6
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312... 28 6.6
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 27 8.7
09_01_0020 + 413723-413738,413867-413934,414849-415144,415275-41... 27 8.7
04_03_0371 - 15050825-15051124 27 8.7
04_03_0321 + 14335813-14336112 27 8.7
02_02_0097 - 6746934-6747005,6747372-6748325,6748421-6748435,674... 27 8.7
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 27 8.7
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 32.7 bits (71), Expect = 0.23
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Frame = +1
Query: 202 KIENGTAAEATNGTPNKSNDNGVPFKDAFKAFSKFGDPKSDGKLITLSQSDKWMKQAKVI 381
K+E A+ + N + NG KDA K G K+ G+++ SD
Sbjct: 149 KLETAVASMESMPASNMGDKNGKSAKDAVSNGDKKGQKKAMGRIMQGDDSDSDYDDDDDD 208
Query: 382 DGKKITTTDTAI--HFKKIKSVKIGIEDYQKF-LDDLAKNKKVELDD 513
+G D KK K K+ I D+ K KN +E+ D
Sbjct: 209 EGGSKDEDDEEFMKRVKKTKVEKLAIVDHSKIEYQPFRKNLYIEVKD 255
>09_02_0179 - 5403985-5404356,5404375-5404446
Length = 147
Score = 30.7 bits (66), Expect = 0.93
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 169 VEQVTQDVKDVKIENGTAAEATNGTPNKSNDNGVP 273
VE ++ D + ++E T TN + + + DNG+P
Sbjct: 9 VELISSDEEHFEVEEATVVNNTNNSDHHAGDNGIP 43
>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -2
Query: 326 PSDLGSPNFENALKASLNGTPLSLLLFGVPLVASAAVPFSILTSFTSCVTCST---AELT 156
P+ GSP ++N AS+ TP G L SA P ++TS+ V+ +T + +T
Sbjct: 1210 PNSFGSPYYQNLHPASVLPTPFGTA--GYALSGSALPP--VMTSYAPQVSVATPVDSPIT 1265
Query: 155 PSAS 144
PS S
Sbjct: 1266 PSFS 1269
>08_02_0258 + 14968858-14970648
Length = 596
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 210 ERNSCGSNQRNAEQKQRQRRT-VQGCLQSIL 299
ER CG E+K+R RR V GCL ++L
Sbjct: 26 EREPCGGGAPRREEKERWRRVLVVGCLVALL 56
>03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 2 HEGLFCVSTSCSVTTKRVYRPKSVYTTHT 88
HEG FC ++ S+T + +P +YT HT
Sbjct: 1068 HEGRFC--SNGSITNSQSKQPDEIYTVHT 1094
>02_05_1276 +
35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = +1
Query: 157 VNSAVEQVTQDVKDVKIENGTAAEATNGTPNKSND--NGVPFKDAFKAFSKF--GDPKSD 324
V SAV QVT ++K +K+EN N S + G+P K F++ G D
Sbjct: 735 VKSAVTQVTAEIKSMKLENSRKQPEVESMNNSSINFGKGLPNFTMKKPFAEVVAGHTARD 794
Query: 325 GKLITLSQSDKWMKQAKVIDGKKITTTD 408
+ L Q + +K D ++++ D
Sbjct: 795 SEFPALQQK-RPLKPGNWKDERQVSGAD 821
>08_01_0512 + 4468486-4469306,4470165-4470255,4470938-4471054
Length = 342
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +1
Query: 130 VNMSADAEGVNSAVEQVTQDVKDVKIENGTAAEATNGTPNKSNDNGVPFKDAFKAFSK 303
+ M AD+E +N ++ V+++ + +A + +ND FK+ F F K
Sbjct: 54 LQMLADSEELNPRMKDWRDKVRELAYDMEDCIDAFTSRVDHNNDGSTGFKEFFHKFKK 111
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -2
Query: 95 QIRCGWYR-HSLGGTLSSWL 39
++ CGW+R H+ GG+ S WL
Sbjct: 658 EVICGWWRNHAAGGSESHWL 677
>09_02_0053 -
3665202-3665900,3666109-3666359,3666612-3666938,
3667017-3667242,3667328-3667846,3668789-3668863,
3668963-3669052,3669142-3669222,3672176-3672222,
3672620-3672685,3673834-3673930,3673983-3674046,
3674160-3674278,3674448-3674563,3676675-3676708
Length = 936
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = +1
Query: 169 VEQVTQDVKDVKIENGTAAEATNGTPNKSNDNGVPFKDAFKAFSKFGDPKSDGKLITLSQ 348
+E + D K+V N A T S+ + K K+F K G PK+ + S
Sbjct: 774 LEADSDDCKEVAALNAATAALNAATSQVSSSHTSGLKPNKKSFKKCGKPKT----LPQSH 829
Query: 349 SDKWMKQAKVIDG 387
+DK +AK G
Sbjct: 830 NDKGKLKAKSSSG 842
>08_02_0911 +
22530370-22530497,22531083-22531126,22531224-22531267,
22531428-22531946,22532032-22532257,22532336-22532662,
22532915-22533165,22533374-22534072
Length = 745
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = +1
Query: 169 VEQVTQDVKDVKIENGTAAEATNGTPNKSNDNGVPFKDAFKAFSKFGDPKSDGKLITLSQ 348
+E + D K+V N A T S+ + K K+F K G PK+ + S
Sbjct: 583 LEADSDDCKEVAALNAATAALNAATSQVSSSHTSGLKPNKKSFKKCGKPKT----LPQSH 638
Query: 349 SDKWMKQAKVIDG 387
+DK +AK G
Sbjct: 639 NDKGKLKAKSSSG 651
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -2
Query: 383 SITFACFIHLSLCDRVMSLPSDLGSPNFENALKASLN 273
++T F+ L++C+ ++P+DLG + L+ S N
Sbjct: 342 NLTMLNFLDLAMCNLTGAIPADLGQIGHLSVLRLSTN 378
>09_01_0020 +
413723-413738,413867-413934,414849-415144,415275-415400,
415484-415566,416514-416628,416755-416847,416963-417021,
417609-417684,417812-417901,418050-418202,418294-418480,
418752-418839,419077-419125,419233-419329
Length = 531
Score = 27.5 bits (58), Expect = 8.7
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Frame = +1
Query: 151 EGVNSAVEQVTQDVKDVKIENGTAAEATNGTPNKSNDNGVPFKDAFKAFSKFGDP---KS 321
+GVN + + V K+ +N A NGT + +++NG F + + + +P K
Sbjct: 146 QGVNISSKDVEPSHKNGHGQNSEWATCGNGTDDDNDNNGAMFYPSSRNKMEVDEPTGSKD 205
Query: 322 DGKLITLSQSDKWMK-QAKVIDGKKITTTDTAIHFKKIKSV 441
+ L D +K +A DG+ + T + KI++V
Sbjct: 206 NDYDYWLPFLDASVKRKASETDGENVYTEKGELKTPKIENV 246
>04_03_0371 - 15050825-15051124
Length = 99
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 310 DPKSDGKLITLSQSDK-WMKQAKVIDGKKITTTDTAIHFKKIKSVKIGIEDYQKFLDDLA 486
+P+ + L+T +Q + ++K+ K DG +++ + KK+K GI + + ++
Sbjct: 23 EPEVEYLLLTRAQWENLYIKEKKGEDGSDSNSSERKVDRKKVKCYNYGIHGH--YANECR 80
Query: 487 KNKKVE 504
K KK E
Sbjct: 81 KPKKEE 86
>04_03_0321 + 14335813-14336112
Length = 99
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 310 DPKSDGKLITLSQSDK-WMKQAKVIDGKKITTTDTAIHFKKIKSVKIGIEDYQKFLDDLA 486
+P+ + L+T +Q + ++K+ K DG +++ + KK+K GI + + ++
Sbjct: 23 EPEVEYLLLTRAQWENLYIKEKKGEDGSDSNSSERKVDRKKVKCYNYGIHGH--YANECR 80
Query: 487 KNKKVE 504
K KK E
Sbjct: 81 KPKKEE 86
>02_02_0097 -
6746934-6747005,6747372-6748325,6748421-6748435,
6748592-6748984
Length = 477
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -2
Query: 365 FIHLSLCDRVMSLPSDLGSPNFENALKASLNGTP-LSLLLFGVPLVASAAVPFSILTSFT 189
F SL + ++ LP S + + + + +G SLL P++AS++ S
Sbjct: 181 FFQQSLLEELLQLPPTRPSSSSSSLVGSPADGAASTSLLRTMTPMMASSSATPSPRELAA 240
Query: 188 SCVTCSTAELTPSASA 141
T +T TPS+S+
Sbjct: 241 QVATTTTTTTTPSSSS 256
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 385 GKKITTTDTAIHFKKIK-SVKIGIEDYQKFLDDLAKNKKVELD 510
G+K+TT D ++ K +K + E Y++FL+ + K +D
Sbjct: 187 GQKLTTNDALVYLKAVKDKFQDKREKYEEFLEVMRDFKSERID 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,621,761
Number of Sequences: 37544
Number of extensions: 289330
Number of successful extensions: 1010
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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