Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M23
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   1.4  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   7.3  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   9.6  
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    25   9.6  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 14  VAPLHHVYQHS-PLDNECAPAAGDSSPEGPREEGQRGSRS 130
           V+P    Y  S PL +   PA GD SP+ P     + S S
Sbjct: 431 VSPKRPTYSRSSPLPSASVPALGDGSPDPPAAPSIQNSLS 470


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 528 ANRCSTSSASVGRDSSHSAPPPSH 457
           A R S  +     DS+HSAP P+H
Sbjct: 438 AGRHSPLNRLTSLDSTHSAPDPNH 461


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 525 NRCSTSSASVGRDSSHSAPPPSHRYP 448
           N  + SS +    S+H +P   HR+P
Sbjct: 704 NNTAPSSRNAKSTSAHKSPKTEHRFP 729


>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 452 YRWDGGGAEWEESRPTDAELVLH 520
           +R+D   +EW+E    DA L+ H
Sbjct: 104 FRFDKAASEWKERGTGDARLLKH 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,157,163
Number of Sequences: 5004
Number of extensions: 13959
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)