Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M23
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996...    44   6e-05
07_03_1671 + 28512585-28513424                                         29   2.4  
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658...    29   3.2  
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191...    29   3.2  
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578...    28   4.2  
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353...    28   5.6  

>03_02_0630 +
           9964593-9964738,9965548-9965603,9965895-9966745,
           9966848-9967046,9967246-9967425,9967591-9967967,
           9968625-9968765
          Length = 649

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 7/54 (12%)
 Frame = +2

Query: 401 YVVQRVRELARGGCLSGYRWDGGG-------AEWEESRPTDAELVLHLFASYLD 541
           Y V+RV+ELA G CL  Y + G G        +W    PTD+ L+L+LFA++L+
Sbjct: 471 YTVKRVQELAEGTCLKNYDYMGHGDGCGKLEKKWISELPTDSLLLLYLFAAFLE 524


>07_03_1671 + 28512585-28513424
          Length = 279

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 516 STSSASVGRDSSHSAPPPSHRYPLRQP 436
           ST +   G  S HS  PPS  YP R P
Sbjct: 35  STEAGGAGDPSVHSGDPPSDDYPDRPP 61


>08_02_1284 -
           25864049-25864202,25864690-25864880,25865053-25865895,
           25865953-25866896,25867052-25867190,25867259-25867334,
           25867666-25867788,25867869-25867952,25868145-25868235,
           25868448-25868532,25868620-25868784,25868872-25868928,
           25870141-25870302
          Length = 1037

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 250 PFHLAHQALQYRHVYPQSQVEMEVREALRVELQP 149
           P  L HQ  Q + + P  QV+  V+E  ++++QP
Sbjct: 550 PQQLHHQQQQTQQLQPVQQVQQSVQEHQQIKIQP 583


>02_01_0285 -
           1913425-1914065,1914094-1914177,1914249-1915140,
           1915205-1915249,1915335-1915870,1915987-1916041
          Length = 750

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = -1

Query: 507 SASVGRDSSHSA--PPPSH-RYPLRQPPR 430
           S++VG  SSH +   PPSH +  LR+PPR
Sbjct: 607 SSTVGETSSHGSCQAPPSHAKTALRKPPR 635


>12_02_0017 -
           12357029-12357070,12357434-12357503,12357722-12357852,
           12358836-12358882,12359762-12360044,12360547-12362413,
           12362454-12362665
          Length = 883

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 543 TSR*EANRCSTSSASVGRDSSHSAPPPSHRYP 448
           T R  +   + SS+     SS SAPPPS R+P
Sbjct: 76  TPRAPSRHATPSSSPPSTPSSASAPPPSGRHP 107


>02_05_0568 -
           30034280-30034393,30034888-30035163,30035246-30035371,
           30035595-30035753,30035893-30036063,30036374-30036493,
           30036565-30036924,30038800-30039686,30039790-30040363,
           30041379-30041507,30042423-30042494,30042572-30042728,
           30042974-30043023,30043569-30044327
          Length = 1317

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 510 SSASVGRDSSHSAPPPSHRYPLRQPPR 430
           SS     DSS S PPP+  +   QPP+
Sbjct: 123 SSGPAHLDSSASMPPPASEFAAAQPPQ 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,264,919
Number of Sequences: 37544
Number of extensions: 139459
Number of successful extensions: 843
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)