Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M23
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical pr...    65   4e-11
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    32   0.31 
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    29   2.2  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    29   2.2  
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    29   2.2  
Z70683-1|CAA94590.1|  511|Caenorhabditis elegans Hypothetical pr...    28   3.8  

>Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical
           protein B0464.6 protein.
          Length = 643

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 18/133 (13%)
 Frame = +2

Query: 197 RLWIHVTILERLVSEMERLDATLAAAGAEP--RLGTASLERVXXXXXXXXXXXXXXX-XX 367
           R WI  TILE L   +++++  L    A P  R+G +S++ +                  
Sbjct: 400 RAWIRNTILEPLAEHIDKVNKILDKEHANPPLRVGVSSVDALKLAAIERDSLKSSDLPFL 459

Query: 368 QPFLEPFPDQRYVVQRVRELARGGCLSGYRWDGGGA---------------EWEESRPTD 502
            PFL   P+Q+Y++ R++EL     +  Y+W+ GG+               EW +S PTD
Sbjct: 460 LPFLSVHPNQKYLISRIKELCATQFMDAYKWNSGGSEPTDDNDQMTRLVRREWNDSLPTD 519

Query: 503 AELVLHLFASYLD 541
           A LV  +F +Y+D
Sbjct: 520 AVLVFDIFLAYMD 532


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 480 HSAPPPSHRYPLRQPPR 430
           HSAPPP  +YP +QPP+
Sbjct: 172 HSAPPPQPQYPQQQPPQ 188


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical protein
            R107.8 protein.
          Length = 1429

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 531  EANRCSTSSASVGRDSSHSAPPPS 460
            + +R    SAS  RDS+H  PPPS
Sbjct: 1327 QTSRSKKESASNSRDSTHLTPPPS 1350


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.elegans
            homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 531  EANRCSTSSASVGRDSSHSAPPPS 460
            + +R    SAS  RDS+H  PPPS
Sbjct: 1327 QTSRSKKESASNSRDSTHLTPPPS 1350


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
            protein protein 6 protein.
          Length = 1106

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 525  NRCSTSSASVGRDSSHSAPPPSHRYPLRQPPR 430
            NR   S A   + S   +PPPS++ P RQ P+
Sbjct: 940  NRTGNSQAPPWQRSRQPSPPPSNQSPWRQQPQ 971


>Z70683-1|CAA94590.1|  511|Caenorhabditis elegans Hypothetical
           protein F13B12.1 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 5   EAPVAPLHHVYQHSPLDNECAPAAGDSSPEGPREEGQRGSRS 130
           E+P   +  +Y+    +   +PA   S+P  P      GSRS
Sbjct: 38  ESPSGDVQDIYKDESFEAPASPARDSSAPASPSAASPAGSRS 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,856,894
Number of Sequences: 27780
Number of extensions: 92120
Number of successful extensions: 460
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)