Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_M21
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0161 + 21400580-21401695 34 0.053
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 31 0.37
07_03_1136 + 24218601-24218734,24218769-24219906 31 0.49
05_02_0060 + 6236624-6237040 30 0.65
08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736 30 0.86
09_02_0109 - 4372621-4373024,4373498-4373760,4373988-4374157 29 1.1
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 2.0
09_01_0010 - 270146-270568 28 2.6
04_03_0583 + 17539541-17539978 28 2.6
04_03_0584 + 17546945-17547382 28 3.5
12_02_0299 - 17051570-17052474,17053542-17053755 27 4.6
10_07_0034 - 12163944-12164537 27 4.6
10_01_0256 - 2688172-2688786,2690779-2690857,2691567-2691652,269... 27 4.6
07_03_0676 + 20618677-20618840,20618938-20619502 27 4.6
07_03_0675 + 20611460-20612053 27 4.6
04_01_0209 + 2603411-2603538,2603580-2604096 27 4.6
03_06_0519 - 34481751-34482722 27 4.6
02_02_0210 + 7873962-7874753 27 4.6
02_02_0209 + 7866348-7867139 27 4.6
07_03_0127 + 13807328-13807846 27 6.0
06_02_0225 + 13257655-13260693 27 6.0
05_03_0202 - 9874205-9874762 27 6.0
07_01_0480 + 3616123-3617506,3618033-3618166,3618578-3618818,361... 27 8.0
>03_05_0161 + 21400580-21401695
Length = 371
Score = 33.9 bits (74), Expect = 0.053
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 1 ARGDNGMHPRNGSMEGGTQVALPPGPAQQSPRGAPP 108
A GD+ + PR G+ GGT PP PAQQ + P
Sbjct: 4 AAGDDAVVPRKGAGGGGTTTPPPPPPAQQQQQQPLP 39
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 31.1 bits (67), Expect = 0.37
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 46 GGTQVALPPGPAQQSPRGAPPGAFSGG 126
GG PP AQ++P G PP A S G
Sbjct: 121 GGPPSGAPPAQAQRTPFGGPPSAMSQG 147
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.7 bits (66), Expect = 0.49
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 7 GDNGMHPRN--GSMEGGTQVALPPGPAQQSPRGAPPGAFSGG 126
G G PR G GG +A PPG + G PPG GG
Sbjct: 138 GGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGGGG 179
>05_02_0060 + 6236624-6237040
Length = 138
Score = 30.3 bits (65), Expect = 0.65
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 77 GPGGRATCVPPSILPLRGCI-PLSP 6
G GG A PP LP RGC+ PL P
Sbjct: 106 GEGGEAARQPPGPLPTRGCLAPLRP 130
>08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736
Length = 869
Score = 29.9 bits (64), Expect = 0.86
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 293 NPHLIDLAGSREQRGSAFELYRKPQAHAQYKVKRCYPHW 409
N H++ G + + E +KP HA+ ++C HW
Sbjct: 212 NTHIMVCTGCNKHFCTRAEAMKKPYGHARLHAQKCEHHW 250
>09_02_0109 - 4372621-4373024,4373498-4373760,4373988-4374157
Length = 278
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 101 APRGDCCAGPGGRATCVPPSILPLRGCIPL 12
AP+G CC T + ++PLRG PL
Sbjct: 163 APQGGCCCREEAATTVLEKRVMPLRGRHPL 192
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 16 GMHPRNGSME-GGTQVALPPGP-AQQSPRGAPPGAFSGG 126
GM PR GGTQ PP P A PR PP +GG
Sbjct: 290 GMPPRIPPPPVGGTQPPPPPPPLANGPPRSIPPPPMTGG 328
>09_01_0010 - 270146-270568
Length = 140
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 16 GMHPRNGSMEGGTQVALPPGPAQQSPRG 99
G+ RNG GG + A PG A P G
Sbjct: 108 GVSARNGGQAGGEETAATPGKAAARPDG 135
>04_03_0583 + 17539541-17539978
Length = 145
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 28 RNGSMEGGTQVALPPGPAQQSPRGA 102
RNG GG + A PG A P GA
Sbjct: 97 RNGGQAGGEEAAATPGKATARPAGA 121
>04_03_0584 + 17546945-17547382
Length = 145
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 28 RNGSMEGGTQVALPPGPAQQSPRGA 102
RNG GG + A PG A P GA
Sbjct: 97 RNGGQVGGEEAAATPGKATARPAGA 121
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 110 PGGAPRGDCCAGPGGRATCVPPSIL 36
PGGA G C G GG VPP+ L
Sbjct: 179 PGGAKNGGQCGGTGGGGD-VPPAAL 202
>10_07_0034 - 12163944-12164537
Length = 197
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 19 MHPRNGSMEGGTQVALPPGPAQQSPRGAP 105
+ PRNG + G +VA P P GAP
Sbjct: 75 LSPRNGGLTEGEEVAARPREKTARPDGAP 103
>10_01_0256 -
2688172-2688786,2690779-2690857,2691567-2691652,
2693046-2693113,2695175-2695244,2696191-2696320,
2696924-2697906
Length = 676
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -3
Query: 107 GGAPRGD--CCAGPGGRATCVPPSI 39
GGAP G CAG G A VPPS+
Sbjct: 78 GGAPGGARFVCAGAGPLALSVPPSV 102
>07_03_0676 + 20618677-20618840,20618938-20619502
Length = 242
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 19 MHPRNGSMEGGTQVALPPGPAQQSPRGAP 105
+ PRNG + G +VA P P GAP
Sbjct: 138 LSPRNGGLTEGEEVAARPREKTARPDGAP 166
>07_03_0675 + 20611460-20612053
Length = 197
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 19 MHPRNGSMEGGTQVALPPGPAQQSPRGAP 105
+ PRNG + G +VA P P GAP
Sbjct: 75 LSPRNGGLTEGEEVAARPREKTARPDGAP 103
>04_01_0209 + 2603411-2603538,2603580-2604096
Length = 214
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 19 MHPRNGSMEGGTQVALPPGPAQQSPRGAP 105
+ PRNG + G +VA P P GAP
Sbjct: 96 LSPRNGGLTEGEEVAARPREKTARPDGAP 124
>03_06_0519 - 34481751-34482722
Length = 323
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 64 LPPGPAQQSPRGAPPGAFSG 123
LPPG + Q P G PPG G
Sbjct: 6 LPPGGSGQKPPGGPPGNRKG 25
>02_02_0210 + 7873962-7874753
Length = 263
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 19 MHPRNGSMEGGTQVALPPGPAQQSPRGAP 105
+ PRNG + G +VA P P GAP
Sbjct: 141 LSPRNGGLTEGEEVAARPREKTARPDGAP 169
>02_02_0209 + 7866348-7867139
Length = 263
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 19 MHPRNGSMEGGTQVALPPGPAQQSPRGAP 105
+ PRNG + G +VA P P GAP
Sbjct: 141 LSPRNGGLTEGEEVAARPREKTARPDGAP 169
>07_03_0127 + 13807328-13807846
Length = 172
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 25 PRNGSMEGGTQVALPPGPAQQSPRGAPPGA 114
PR GS + G P G AQ S +GA G+
Sbjct: 84 PRTGSSKDGEGKQAPDGSAQPSIKGATDGS 113
>06_02_0225 + 13257655-13260693
Length = 1012
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 58 VALPPGPAQQSPRGAPPGAFSGG 126
V +PP P Q GAPP A S G
Sbjct: 10 VLMPPTPDNQPSGGAPPAAPSAG 32
>05_03_0202 - 9874205-9874762
Length = 185
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 25 PRNGSMEGGTQVALPPGPAQQSPRGAP 105
PRNG + G +VA P P GAP
Sbjct: 69 PRNGGLTEGEEVAARPREKTARPDGAP 95
>07_01_0480 +
3616123-3617506,3618033-3618166,3618578-3618818,
3618912-3619120,3619234-3619265,3619363-3619474,
3619609-3619890
Length = 797
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 1 ARGDNGMHPRNGSMEGGTQVALPPGPAQQSPRGAPPGAFSG 123
A GD+ HP V + P A++ P GA G +G
Sbjct: 369 ATGDDTQHPSPFCKNQAIAVGIVPDQARRKPSGARSGLVAG 409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,166,910
Number of Sequences: 37544
Number of extensions: 173306
Number of successful extensions: 825
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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