Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M21
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.021
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    20   9.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    20   9.7  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    20   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 0.021
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +1

Query: 7   GDNGMHPRNGSMEGGTQVALPPGPAQQSPRGAPPGA 114
           G  G  P         Q   PP P+Q  P G PPGA
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGA 54



 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/28 (28%), Positives = 11/28 (39%)
 Frame = +1

Query: 25  PRNGSMEGGTQVALPPGPAQQSPRGAPP 108
           P  G +       +PP P   +  G PP
Sbjct: 404 PAGGQLPPSAGAPMPPIPNMSNMSGMPP 431


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 327 NNAVRRSNYTENLKHMHNIR*SDAIPI 407
           NN    +NY    K  +NI   + IPI
Sbjct: 95  NNYNNNNNYNNYKKLYYNINYIEQIPI 121


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 327 NNAVRRSNYTENLKHMHNIR*SDAIPI 407
           NN    +NY    K  +NI   + +P+
Sbjct: 93  NNNYNNNNYNNYKKLYYNINYIEQVPV 119


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 73  GPAQQSPRGAPPGAF 117
           GP+   PR  PP A+
Sbjct: 379 GPSTSFPRFIPPNAY 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,381
Number of Sequences: 438
Number of extensions: 1744
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)