Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M18
         (237 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    73   5e-15
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   1.3  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    24   3.1  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    23   7.1  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    23   7.1  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    23   7.1  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    22   9.4  

>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 72.9 bits (171), Expect = 5e-15
 Identities = 31/42 (73%), Positives = 35/42 (83%)
 Frame = +2

Query: 2   ADRFVEGTCPFPGCGYEDARGDQCDKCGKLINAIELIRPRCK 127
           ADR+VEGTCP   CGY+DARGDQCD CG L+NA ELI P+CK
Sbjct: 355 ADRYVEGTCP--KCGYDDARGDQCDGCGGLLNAFELIDPKCK 394



 Score = 30.7 bits (66), Expect = 0.027
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 145 PLSSPSEQLFLXLGQLEPSIRTWI--STVEGGW 237
           P+   ++ +FL L +L+P++ +W   S VEG W
Sbjct: 400 PVKRETKHVFLSLDKLQPAVESWAMQSAVEGKW 432


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 230 PSTVEIHVLIDGSNXPSXRNSCSLGL 153
           PSTV++H+   G N P+     +L L
Sbjct: 341 PSTVDMHIAFTGLNKPTIERERNLKL 366


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 197 GSNXPSXRNSCSLGLDSGRVPT 132
           G   P  RN C + ++  RVPT
Sbjct: 286 GDGFPQVRNGCPVIINGKRVPT 307


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 26  CPFPGCGYEDARGDQCDKCGKL 91
           C FPGC    +R D+  +  ++
Sbjct: 56  CTFPGCAKRFSRSDELTRHARI 77


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 208 TWISTVEGG 234
           TW+ST+EGG
Sbjct: 161 TWVSTMEGG 169


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 26  CPFPGCGYEDARGDQCDKCGK 88
           CP P C Y    GD+ D   K
Sbjct: 214 CPNPSCMYLHEPGDEVDSYTK 234


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 151 SSPSEQLFLXLGQLEPSIRTWISTVEGGW 237
           SSP ++ +  L  L  ++ T  S ++G W
Sbjct: 82  SSPDQRKWELLQNLYSNLTTCFSHIDGAW 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 771,720
Number of Sequences: 5004
Number of extensions: 8971
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)