Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_M18
(237 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0207 - 17927753-17927983,17928077-17928178,17928273-179285... 69 4e-13
10_07_0110 + 12977702-12977958,12978374-12978527,12978661-129787... 65 9e-12
01_07_0082 - 40965947-40967023 28 1.2
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 27 1.6
11_06_0673 - 26114861-26115003,26115141-26115290,26115372-261155... 27 2.8
07_03_1624 + 28204892-28205024,28205160-28205242,28205305-282053... 26 4.9
02_05_0573 - 30084897-30085529 26 4.9
09_04_0642 - 19174274-19174783 25 8.6
08_02_0032 + 11388092-11388179,11389159-11389565 25 8.6
05_05_0041 + 21793872-21794186 25 8.6
>06_03_0207 -
17927753-17927983,17928077-17928178,17928273-17928502,
17929257-17929343,17931263-17931389,17931485-17931628,
17931920-17931985,17932136-17932254,17932437-17932551,
17932626-17932732,17932969-17932983,17933810-17933900,
17934528-17934671,17934750-17934980,17935093-17935248,
17935330-17935483,17935973-17936117,17936241-17936355
Length = 792
Score = 69.3 bits (162), Expect = 4e-13
Identities = 28/42 (66%), Positives = 31/42 (73%)
Frame = +2
Query: 2 ADRFVEGTCPFPGCGYEDARGDQCDKCGKLINAIELIRPRCK 127
ADR VEG CP GC YE ARGDQC+ C KL+N ELI P+CK
Sbjct: 149 ADRLVEGKCPTEGCNYEAARGDQCENCSKLLNPTELIDPKCK 190
>10_07_0110 +
12977702-12977958,12978374-12978527,12978661-12978798,
12978903-12979133,12979228-12979371,12979516-12979606,
12979798-12979868,12980014-12980128,12980313-12980431,
12980539-12980604,12980701-12980829,12980919-12981062,
12981522-12981704
Length = 613
Score = 64.9 bits (151), Expect = 9e-12
Identities = 25/37 (67%), Positives = 30/37 (81%)
Frame = +2
Query: 2 ADRFVEGTCPFPGCGYEDARGDQCDKCGKLINAIELI 112
ADR VEG CP GC Y+ ARGDQC+KCGKL+N+ EL+
Sbjct: 148 ADRLVEGYCPTEGCNYDSARGDQCEKCGKLLNSTELV 184
>01_07_0082 - 40965947-40967023
Length = 358
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 63 PRASSYPHPGKGQVPST 13
P S+YP PGKG PST
Sbjct: 197 PPQSAYPPPGKGNEPST 213
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +2
Query: 65 DQCDKCGKLINAIELIR----PRCKSLWALAHCQALANNC 172
D+C+ C K ++ I+L+ P KS + +HC+ + C
Sbjct: 8 DKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMC 47
>11_06_0673 -
26114861-26115003,26115141-26115290,26115372-26115561,
26115646-26115851,26117018-26117459
Length = 376
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 2 ADRFVEGTCPFPGCGYED 55
A R VEGTC FPG + +
Sbjct: 90 ARRLVEGTCSFPGIQFRE 107
>07_03_1624 + 28204892-28205024,28205160-28205242,28205305-28205376,
28205889-28205946,28206554-28206603,28207805-28207873,
28208183-28208317,28208410-28208581,28208663-28208754,
28208837-28209244,28209783-28210704,28211592-28211831,
28211898-28212229,28212460-28212608,28213265-28213841,
28214078-28214224,28214693-28214968,28215296-28215403,
28215634-28215839,28216079-28216217,28216329-28216982,
28218040-28218099,28218234-28218388,28218414-28218636,
28218729-28218773
Length = 1834
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 227 STVEIHVLIDGSNXPSXR 174
+T+E+HVLI G+N S R
Sbjct: 953 NTIEVHVLIRGNNDSSHR 970
>02_05_0573 - 30084897-30085529
Length = 210
Score = 25.8 bits (54), Expect = 4.9
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +2
Query: 71 CDKCGKLINAIELIRPRCKSLWALA 145
CD+C ++I+ + + P+ + LW +A
Sbjct: 117 CDQCDEMIDHLLVACPKSRQLWWIA 141
>09_04_0642 - 19174274-19174783
Length = 169
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 71 CDKCGKLINAIELIRPRCKSLWALA 145
CD+C ++I+ + + P + LW +A
Sbjct: 69 CDQCDEIIDYLLVACPESRQLWWMA 93
>08_02_0032 + 11388092-11388179,11389159-11389565
Length = 164
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 127 KSVGTRPLSSPSEQLFLXLGQLEPSIRTWISTV 225
K++ PL P+ + + L L+P + TW ++V
Sbjct: 64 KALPAAPLPLPNPRPWTSLACLDPHVGTWTTSV 96
>05_05_0041 + 21793872-21794186
Length = 104
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 23 TCPFPGCGYEDARGDQC 73
T P GCG E A GD C
Sbjct: 5 TAPRDGCGVETAVGDGC 21
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,993,171
Number of Sequences: 37544
Number of extensions: 80987
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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