Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_M18
(237 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical pr... 66 4e-12
Z92808-4|CAD54148.1| 928|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z92808-3|CAB07268.1| 946|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z81476-15|CAD54124.1| 928|Caenorhabditis elegans Hypothetical p... 26 3.1
Z81476-14|CAB03924.1| 946|Caenorhabditis elegans Hypothetical p... 26 3.1
Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 25 5.4
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 25 5.4
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 25 5.4
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 25 5.4
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 25 5.4
Z92780-8|CAI46553.1| 587|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z92780-7|CAI46552.1| 624|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z92780-6|CAI46551.1| 691|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z92780-5|CAI46550.1| 532|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z81068-16|CAJ30230.1| 587|Caenorhabditis elegans Hypothetical p... 25 7.2
Z81068-15|CAB02980.2| 624|Caenorhabditis elegans Hypothetical p... 25 7.2
Z81068-14|CAJ30229.1| 691|Caenorhabditis elegans Hypothetical p... 25 7.2
Z81068-13|CAJ30228.1| 532|Caenorhabditis elegans Hypothetical p... 25 7.2
Z81068-11|CAB02981.1| 454|Caenorhabditis elegans Hypothetical p... 25 7.2
Z81068-10|CAJ30226.1| 258|Caenorhabditis elegans Hypothetical p... 25 7.2
EF443133-1|ABO31113.1| 656|Caenorhabditis elegans LIM-9 isoform... 25 7.2
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 25 9.5
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 25 9.5
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z36753-16|CAA85338.2| 538|Caenorhabditis elegans Hypothetical p... 25 9.5
U53336-5|AAO21380.1| 271|Caenorhabditis elegans Hypothetical pr... 25 9.5
U53336-4|AAA96177.2| 290|Caenorhabditis elegans Hypothetical pr... 25 9.5
AF187012-1|AAG35182.1| 538|Caenorhabditis elegans nicotinic ace... 25 9.5
>Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical
protein F58B3.5 protein.
Length = 917
Score = 65.7 bits (153), Expect = 4e-12
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +2
Query: 2 ADRFVEGTCPFPGCGYEDARGDQCDKCGKLINAIELIRPRC 124
ADRFV GTCP C Y+DARGDQCD CGKLINA++L +C
Sbjct: 168 ADRFVTGTCPM--CAYDDARGDQCDGCGKLINAVDLKDAKC 206
>Z92808-4|CAD54148.1| 928|Caenorhabditis elegans Hypothetical
protein M04C3.1b protein.
Length = 928
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 80 CGKLINAIELIRPRCKSLWALAH-CQALAN 166
CG+L A E + CKS + L + CQ L N
Sbjct: 844 CGRLYEAWEHAKRCCKSAYTLGYICQQLRN 873
>Z92808-3|CAB07268.1| 946|Caenorhabditis elegans Hypothetical
protein M04C3.1a protein.
Length = 946
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 80 CGKLINAIELIRPRCKSLWALAH-CQALAN 166
CG+L A E + CKS + L + CQ L N
Sbjct: 862 CGRLYEAWEHAKRCCKSAYTLGYICQQLRN 891
>Z81476-15|CAD54124.1| 928|Caenorhabditis elegans Hypothetical
protein M04C3.1b protein.
Length = 928
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 80 CGKLINAIELIRPRCKSLWALAH-CQALAN 166
CG+L A E + CKS + L + CQ L N
Sbjct: 844 CGRLYEAWEHAKRCCKSAYTLGYICQQLRN 873
>Z81476-14|CAB03924.1| 946|Caenorhabditis elegans Hypothetical
protein M04C3.1a protein.
Length = 946
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 80 CGKLINAIELIRPRCKSLWALAH-CQALAN 166
CG+L A E + CKS + L + CQ L N
Sbjct: 862 CGRLYEAWEHAKRCCKSAYTLGYICQQLRN 891
>Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical
protein R06C7.9 protein.
Length = 729
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = +2
Query: 71 CDKCGKLINAIELIRPRCKSLWALAHCQALANNC 172
C C K N + IR +++ CQ NC
Sbjct: 496 CGVCTKKFNTLSSIRRHMSMEYSIFRCQQCGRNC 529
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
protein F53B6.2a protein.
Length = 1045
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 5 DRFVEGTCPFPGCGYEDARGDQCDKCGKLI 94
D + + F CG RGD CD GK I
Sbjct: 136 DGLISSSFRFDACGVCGGRGDTCDN-GKFI 164
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 200 DGSNXPSXRNSCSLGLDSGRVPTD 129
DGS P+ + +LG D +PTD
Sbjct: 5774 DGSTLPTDASGAALGPDGKPIPTD 5797
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 230 PSTVEIHVLIDGSNXPSXRNSCSLGLDSGRVPTD 129
P+ + I V DG+ P+ + +GLD VPTD
Sbjct: 2324 PTKITI-VSPDGTPLPTDASGSPIGLDGQPVPTD 2356
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 200 DGSNXPSXRNSCSLGLDSGRVPTD 129
DGS P+ + +LG D +PTD
Sbjct: 5819 DGSTLPTDASGAALGPDGKPIPTD 5842
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 230 PSTVEIHVLIDGSNXPSXRNSCSLGLDSGRVPTD 129
P+ + I V DG+ P+ + +GLD VPTD
Sbjct: 2387 PTKITI-VSPDGTPLPTDASGSPIGLDGQPVPTD 2419
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 ELIRPRCKSLWALAHCQALANNC 172
E++ R + AL CQALA NC
Sbjct: 66 EMLLGRARRQAALPDCQALAKNC 88
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 200 DGSNXPSXRNSCSLGLDSGRVPTD 129
DGS P+ + +LG D +PTD
Sbjct: 5819 DGSTLPTDASGAALGPDGKPIPTD 5842
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 230 PSTVEIHVLIDGSNXPSXRNSCSLGLDSGRVPTD 129
P+ + I V DG+ P+ + +GLD VPTD
Sbjct: 2387 PTKITI-VSPDGTPLPTDASGSPIGLDGQPVPTD 2419
>Z92780-8|CAI46553.1| 587|Caenorhabditis elegans Hypothetical
protein F25H5.1b protein.
Length = 587
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 47 YEDARGDQCDKCGKLI 94
YED +QCD+C K I
Sbjct: 366 YEDVFANQCDECAKPI 381
>Z92780-7|CAI46552.1| 624|Caenorhabditis elegans Hypothetical
protein F25H5.1a protein.
Length = 624
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 47 YEDARGDQCDKCGKLI 94
YED +QCD+C K I
Sbjct: 403 YEDVFANQCDECAKPI 418
>Z92780-6|CAI46551.1| 691|Caenorhabditis elegans Hypothetical
protein F25H5.1f protein.
Length = 691
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 47 YEDARGDQCDKCGKLI 94
YED +QCD+C K I
Sbjct: 403 YEDVFANQCDECAKPI 418
>Z92780-5|CAI46550.1| 532|Caenorhabditis elegans Hypothetical
protein F25H5.1c protein.
Length = 532
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 47 YEDARGDQCDKCGKLI 94
YED +QCD+C K I
Sbjct: 311 YEDVFANQCDECAKPI 326
>Z81068-16|CAJ30230.1| 587|Caenorhabditis elegans Hypothetical
protein F25H5.1b protein.
Length = 587
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 47 YEDARGDQCDKCGKLI 94
YED +QCD+C K I
Sbjct: 366 YEDVFANQCDECAKPI 381
>Z81068-15|CAB02980.2| 624|Caenorhabditis elegans Hypothetical
protein F25H5.1a protein.
Length = 624
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 47 YEDARGDQCDKCGKLI 94
YED +QCD+C K I
Sbjct: 403 YEDVFANQCDECAKPI 418
>Z81068-14|CAJ30229.1| 691|Caenorhabditis elegans Hypothetical
protein F25H5.1f protein.
Length = 691
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 47 YEDARGDQCDKCGKLI 94
YED +QCD+C K I
Sbjct: 403 YEDVFANQCDECAKPI 418
>Z81068-13|CAJ30228.1| 532|Caenorhabditis elegans Hypothetical
protein F25H5.1c protein.
Length = 532
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 47 YEDARGDQCDKCGKLI 94
YED +QCD+C K I
Sbjct: 311 YEDVFANQCDECAKPI 326
>Z81068-11|CAB02981.1| 454|Caenorhabditis elegans Hypothetical
protein F25H5.1e protein.
Length = 454
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 47 YEDARGDQCDKCGKLI 94
YED +QCD+C K I
Sbjct: 233 YEDVFANQCDECAKPI 248
>Z81068-10|CAJ30226.1| 258|Caenorhabditis elegans Hypothetical
protein F25H5.1d protein.
Length = 258
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 47 YEDARGDQCDKCGKLI 94
YED +QCD+C K I
Sbjct: 37 YEDVFANQCDECAKPI 52
>EF443133-1|ABO31113.1| 656|Caenorhabditis elegans LIM-9 isoform
protein.
Length = 656
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 47 YEDARGDQCDKCGKLI 94
YED +QCD+C K I
Sbjct: 403 YEDVFANQCDECAKPI 418
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 184 GQLEPSIRTWISTVEGGW 237
G+L P+I+ W V GW
Sbjct: 807 GELVPNIKLWAELVSHGW 824
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 184 GQLEPSIRTWISTVEGGW 237
G+L P+I+ W V GW
Sbjct: 807 GELVPNIKLWAELVSHGW 824
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 184 GQLEPSIRTWISTVEGGW 237
G+L P+I+ W V GW
Sbjct: 807 GELVPNIKLWAELVSHGW 824
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 184 GQLEPSIRTWISTVEGGW 237
G+L P+I+ W V GW
Sbjct: 807 GELVPNIKLWAELVSHGW 824
>Z36753-16|CAA85338.2| 538|Caenorhabditis elegans Hypothetical
protein T09A5.3 protein.
Length = 538
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 38 GCGYEDARGDQCDKCGKLINAIELIR 115
G Y D+ DQC +C K ++R
Sbjct: 373 GSSYRDSSADQCVQCAKNAELKSILR 398
>U53336-5|AAO21380.1| 271|Caenorhabditis elegans Hypothetical
protein K07C11.7b protein.
Length = 271
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 35 PGCGYEDARGDQCDKCGKLINAIELIRP 118
P GY D GD+ C L+ +E I+P
Sbjct: 195 PPLGYLDQFGDERWGCRDLLKTVERIQP 222
>U53336-4|AAA96177.2| 290|Caenorhabditis elegans Hypothetical
protein K07C11.7a protein.
Length = 290
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 35 PGCGYEDARGDQCDKCGKLINAIELIRP 118
P GY D GD+ C L+ +E I+P
Sbjct: 214 PPLGYLDQFGDERWGCRDLLKTVERIQP 241
>AF187012-1|AAG35182.1| 538|Caenorhabditis elegans nicotinic
acetylcholine receptor-like subunit ACR-7 protein.
Length = 538
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 38 GCGYEDARGDQCDKCGKLINAIELIR 115
G Y D+ DQC +C K ++R
Sbjct: 373 GSSYRDSSADQCVQCAKNAELKSILR 398
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,575,750
Number of Sequences: 27780
Number of extensions: 60543
Number of successful extensions: 393
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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