Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M16
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   190   5e-50
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   186   9e-49
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    25   3.4  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   4.5  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    25   5.9  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    24   7.8  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  190 bits (464), Expect = 5e-50
 Identities = 94/128 (73%), Positives = 100/128 (78%)
 Frame = +3

Query: 21  SADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMXXXXXXXXX 200
           S DAPMFVVGVNLE ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM         
Sbjct: 125 SKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTAT 184

Query: 201 XXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPQLNGKLTGMAFRVPVANVSVVD 380
               DGPS K WR GRGA  NIIP+STGAAKAVGKVIP LNGKLTGMAFRVP  +VSVVD
Sbjct: 185 QKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVD 244

Query: 381 LTVRLGKP 404
           LTV+L KP
Sbjct: 245 LTVKLAKP 252


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  186 bits (454), Expect = 9e-49
 Identities = 92/128 (71%), Positives = 99/128 (77%)
 Frame = +3

Query: 21  SADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMXXXXXXXXX 200
           S DAPM+VVGVN E ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM         
Sbjct: 125 SKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTAT 184

Query: 201 XXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPQLNGKLTGMAFRVPVANVSVVD 380
               DGPS K WR GRGA  NIIP+STGAAKAVGKVIP LNGKLTGMAFRVP  +VSVVD
Sbjct: 185 QKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVD 244

Query: 381 LTVRLGKP 404
           LTV+L KP
Sbjct: 245 LTVKLAKP 252


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +2

Query: 197 HPEDC*WTFWKTVARW 244
           +P+D  W +W++++ W
Sbjct: 91  NPKDVFWVYWRSISEW 106


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 285 AAKAVGKVIPQLNGKLTGMAFRVPVANVS 371
           +A A    +PQ N + TG+AF++ V ++S
Sbjct: 98  SANATDFTVPQTNLETTGIAFQLTVNSLS 126


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 264 CFAEPHGHRATVFQKVHQQSSG 199
           C A  HGH+ T+ Q   Q++ G
Sbjct: 240 CIATLHGHKNTIMQASFQKNFG 261


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 200 GGSSGMHCSHQTFNNF 153
           GGS+G+  +HQ +N F
Sbjct: 36  GGSAGISVAHQIYNKF 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,630,013
Number of Sequences: 5004
Number of extensions: 30346
Number of successful extensions: 64
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)