Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_M16
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 191 2e-49
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 187 3e-48
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 182 1e-46
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 178 1e-45
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 178 2e-45
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 126 5e-30
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 116 5e-27
08_02_0605 + 19237482-19237644,19237957-19238246 29 1.8
10_07_0012 - 11791524-11791957,11792014-11792108,11792163-117922... 28 2.4
09_02_0082 - 4060018-4061604 27 5.6
06_03_1221 - 28514952-28518152 27 5.6
01_06_0391 + 28949067-28949193,28949377-28949596,28949687-289497... 27 5.6
01_06_0115 + 26585481-26586401,26586501-26586556,26586747-265868... 27 5.6
02_02_0397 - 9763789-9763924,9764264-9764439,9764569-9764686,976... 27 7.5
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123... 27 7.5
12_01_0772 - 7016864-7017012,7017114-7017262,7017346-7017489,701... 26 9.9
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 191 bits (465), Expect = 2e-49
Identities = 90/127 (70%), Positives = 100/127 (78%)
Frame = +3
Query: 21 SADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMXXXXXXXXX 200
SADAPMFVVGVN ++YDP V+SNASCTTNCLAPLAKV+H+ F I+EGLM
Sbjct: 261 SADAPMFVVGVNEKSYDPKMNVVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTAT 320
Query: 201 XXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPQLNGKLTGMAFRVPVANVSVVD 380
DGPS K WR GRGA QNIIP+STGAAKAVGKV+P+LNGKLTGMAFRVP NVSVVD
Sbjct: 321 QKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVD 380
Query: 381 LTVRLGK 401
LT R+ K
Sbjct: 381 LTCRIEK 387
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 187 bits (456), Expect = 3e-48
Identities = 90/127 (70%), Positives = 98/127 (77%)
Frame = +3
Query: 21 SADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMXXXXXXXXX 200
SADAPMFVVGVN + Y+PS V+SNASCTTNCLAPLAK++H+ F I EGLM
Sbjct: 202 SADAPMFVVGVNEKNYNPSMNVVSNASCTTNCLAPLAKIVHEEFGIAEGLMTTVHATTAT 261
Query: 201 XXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPQLNGKLTGMAFRVPVANVSVVD 380
DGPS K WR GRGA QNIIP+STGAAKAVGKV+P LNGKLTGMAFRVP NVSVVD
Sbjct: 262 QKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPNVSVVD 321
Query: 381 LTVRLGK 401
LT RL K
Sbjct: 322 LTCRLEK 328
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 182 bits (443), Expect = 1e-46
Identities = 88/128 (68%), Positives = 96/128 (75%)
Frame = +3
Query: 21 SADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMXXXXXXXXX 200
S DAPMFVVGVN + Y P ++SNASCTTNCLAPLAKVI+D F I+EGLM
Sbjct: 175 SKDAPMFVVGVNEKEYKPDIDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITAT 234
Query: 201 XXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPQLNGKLTGMAFRVPVANVSVVD 380
DGPS K WR GR A NIIP+STGAAKAVGKV+P LNGKLTGMAFRVP +VSVVD
Sbjct: 235 QKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVD 294
Query: 381 LTVRLGKP 404
LTVRL KP
Sbjct: 295 LTVRLEKP 302
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 178 bits (434), Expect = 1e-45
Identities = 86/127 (67%), Positives = 94/127 (74%)
Frame = +3
Query: 21 SADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMXXXXXXXXX 200
S DAPMFV GVN + Y ++SNASCTTNCLAPLAKVIHDNF IIEGLM
Sbjct: 150 SKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITAT 209
Query: 201 XXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPQLNGKLTGMAFRVPVANVSVVD 380
DGPS K WR GR A NIIP+STGAAKAVGKV+P LNGKLTGM+FRVP +VSVVD
Sbjct: 210 QKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVD 269
Query: 381 LTVRLGK 401
LTVR+ K
Sbjct: 270 LTVRIEK 276
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 178 bits (433), Expect = 2e-45
Identities = 87/128 (67%), Positives = 95/128 (74%)
Frame = +3
Query: 21 SADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMXXXXXXXXX 200
S DAPMFVVGVN + Y ++SNASCTTNCLAPLAKVI+D F I+EGLM
Sbjct: 146 SKDAPMFVVGVNEKEYKSDVNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITAT 205
Query: 201 XXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPQLNGKLTGMAFRVPVANVSVVD 380
DGPS K WR GR A NIIP+STGAAKAVGKV+P LNGKLTGMAFRVP +VSVVD
Sbjct: 206 QKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVD 265
Query: 381 LTVRLGKP 404
LTVRL KP
Sbjct: 266 LTVRLEKP 273
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 126 bits (305), Expect = 5e-30
Identities = 64/125 (51%), Positives = 75/125 (60%)
Frame = +3
Query: 27 DAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMXXXXXXXXXXX 206
D P +VVGVN + Y P +ISNASCTTNCLAP K++ F II+G M
Sbjct: 194 DIPTYVVGVNADQYSPDEPIISNASCTTNCLAPFVKILDQKFGIIKGTMTTTHSYTGDQR 253
Query: 207 XXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPQLNGKLTGMAFRVPVANVSVVDLT 386
D L R R A NI+P STGAAKAV V+P L GKL G+A RVP NVSVVDL
Sbjct: 254 LLDASHRDL-RRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLV 312
Query: 387 VRLGK 401
V++ K
Sbjct: 313 VQVSK 317
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 116 bits (280), Expect = 5e-27
Identities = 62/127 (48%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
Frame = +3
Query: 24 ADAPMFVVGVNLEAYDPSY-KVISNASCTTNCLAPLAKVIHDNFEIIEGLMXXXXXXXXX 200
AD P +V+GVN Y +ISNASCTTNCLAP K++ + F I++G M
Sbjct: 204 ADIPTYVLGVNEGDYSHEVANIISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGD 263
Query: 201 XXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPQLNGKLTGMAFRVPVANVSVVD 380
D L R R A NI+P STGAAKAV V+PQL GKL G+A RVP NVSVVD
Sbjct: 264 QRLLDASHRDL-RRARAAALNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTPNVSVVD 322
Query: 381 LTVRLGK 401
L + K
Sbjct: 323 LVINTVK 329
>08_02_0605 + 19237482-19237644,19237957-19238246
Length = 150
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 206 LLGGSSGM--HCSHQTFNNFKVVVDDLCEGCE 117
LLGGSSG H + FN ++ V C+GCE
Sbjct: 12 LLGGSSGKTSHKKKRQFNTVELKVRMDCDGCE 43
>10_07_0012 -
11791524-11791957,11792014-11792108,11792163-11792226,
11792327-11792591,11792670-11793127,11793271-11793592
Length = 545
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 11 ARGKC*CSHVCSWC 52
ARGK C+ VCSWC
Sbjct: 455 ARGKKLCTRVCSWC 468
>09_02_0082 - 4060018-4061604
Length = 528
Score = 27.1 bits (57), Expect = 5.6
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 343 AIPVSFPLSCGMTLPT--ALAAPVEAGIMFC*APRPSRHSFPEG 218
A PV PL+ +PT ALA PV+ F +P +R+SF G
Sbjct: 256 APPVPAPLAPTPPIPTPPALAPPVDVPPGFTVSPTTTRYSFGYG 299
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 27.1 bits (57), Expect = 5.6
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 213 DGPSGKLWRDGRGAQQNIIP--ASTGAAKAVGKVIPQLNGKLTGMAFRVPVANVSVVDLT 386
DG +LW GRG I P A+ A + L+G+ + F +P N +VVD++
Sbjct: 72 DGAVTRLWLPGRGLGGTISPSIANLTALTYLNLSGNSLSGRFPDLLFALP--NATVVDVS 129
>01_06_0391 +
28949067-28949193,28949377-28949596,28949687-28949732,
28949838-28949911,28950279-28950359,28950761-28950803,
28950932-28950993,28951120-28951177
Length = 236
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 63 LPG*HQLQTWEHQHLPRAAS 4
L G H ++ W H+ LP AAS
Sbjct: 83 LAGFHHVRAWSHESLPAAAS 102
>01_06_0115 +
26585481-26586401,26586501-26586556,26586747-26586876,
26587396-26587506,26587606-26587674,26588125-26588198,
26588446-26588581,26588702-26588795,26588901-26589000,
26589100-26589224,26589597-26589634,26589662-26589742,
26589868-26589972,26590102-26590166,26590371-26590572,
26591073-26591159,26591238-26591294,26591369-26591458,
26591572-26591658,26592204-26592278,26592363-26592463,
26592565-26592655
Length = 964
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 93 NASCTTNCLAPLAKVIHDNFEII 161
N SCT NC A + V HD I+
Sbjct: 899 NHSCTPNCYARIMSVGHDESRIV 921
>02_02_0397 -
9763789-9763924,9764264-9764439,9764569-9764686,
9764813-9765088,9765200-9765267,9765386-9766005,
9766229-9766381,9768793-9768890,9769016-9769107,
9769212-9769295
Length = 606
Score = 26.6 bits (56), Expect = 7.5
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = -2
Query: 236 PQFSRRSINSLLGGSSGMHCSHQTFNNFKVVVDDLCEGCEAVSCAGSI*NNF--VGRIVG 63
P F +I GG+ G+ +HQ N V DDL E C + AG + +F RI
Sbjct: 404 PAFGTAAIGIAKGGAKGLIFAHQRTN----VFDDL-ENCNKILPAGCMMVDFEIAARIAS 458
Query: 62 FQVDTNYKHGSIS 24
+ T IS
Sbjct: 459 YLNSTRKPVAKIS 471
>01_06_0847 +
32411521-32411619,32411737-32411851,32412292-32412375,
32412430-32413478,32414690-32416371,32416477-32416586,
32417634-32418430,32418839-32418951,32419147-32419194,
32419425-32419652,32419732-32419829,32419967-32420019
Length = 1491
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 222 SGKLWRDGRGAQQNIIPASTGAAKAVGKVIPQLNGK 329
S K D +G + ++PAST + ++P+L K
Sbjct: 535 SDKKLMDSQGKDRLLVPASTDIRRKQSSMVPELTSK 570
>12_01_0772 -
7016864-7017012,7017114-7017262,7017346-7017489,
7017549-7017719,7017907-7018020,7018115-7018215,
7018296-7018416,7018601-7018830,7019203-7019265,
7019528-7019570,7019860-7019953,7020428-7020501,
7020616-7020744,7020940-7021017,7021353-7021639
Length = 648
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 257 LSPTAIAPQFSRRSINSLLGGSSGMHCSHQTFNN 156
L+ T + P F++ +++LLG SSG+ + NN
Sbjct: 340 LNDTKMQPLFAKIIVHTLLGSSSGIRTLEISENN 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,406,420
Number of Sequences: 37544
Number of extensions: 228942
Number of successful extensions: 556
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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