Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M16
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    26   0.19 
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   5.3  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.0  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 25.8 bits (54), Expect = 0.19
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 341 GFPCSCRKCISC 376
           G  CSC KCI C
Sbjct: 82  GMQCSCNKCIGC 93


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 355 GTRKAIPVSFPLSCGMT 305
           G ++ I  +FP +CG T
Sbjct: 9   GKKRYITAAFPSACGKT 25


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 98  SI*NNFVGRIVGFQVDTNY 42
           S+ NN++  I  +  D NY
Sbjct: 84  SLSNNYISNISNYNNDNNY 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,170
Number of Sequences: 438
Number of extensions: 1901
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)