Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M15
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.09c |||DNA-binding TFAR19-related protein|Schizosacchar...    59   4e-10
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    30   0.25 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   3.1  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   4.1  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   5.5  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    25   5.5  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    25   9.5  

>SPAC23C4.09c |||DNA-binding TFAR19-related
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 131

 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 28/68 (41%), Positives = 44/68 (64%)
 Frame = +2

Query: 248 SILSQALSQDARARLNTIKLSRPEKGAMVENMICRMAQMGQVQNRITEQELIQLLESVNQ 427
           ++LSQ L   AR RL  I L R ++   VE ++ RMA+ GQ+ ++I+E ELI+LLE ++ 
Sbjct: 47  NLLSQILEHPARDRLRRIALVRKDRAEAVEELLLRMAKTGQISHKISEPELIELLEKISG 106

Query: 428 QMPKSTST 451
           ++ K   T
Sbjct: 107 EVSKRNET 114


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 376 LDLAHLSHPTDHVFHHSSFFRPA 308
           + L +LSHPTD  F   ++FRP+
Sbjct: 259 ITLDNLSHPTDEYFEAKAYFRPS 281


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 362  MGQVQNRITEQELIQLLESVNQQMPKSTSTVKF 460
            +  V     EQE+  LL ++ Q +P+S+S+  F
Sbjct: 1156 LSPVDTITAEQEMRDLLHNIRQPLPRSSSSKTF 1188


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 346 DHVFHHSSFFRPAEFY-CVQS 287
           DHVFH ++ F+P+  Y C +S
Sbjct: 697 DHVFHVNAIFKPSRCYICSES 717


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
 Frame = -3

Query: 343 HVFHHSSFFRPAEFYCV-----QSSSCILAQCL 260
           H++    F RP+E  C+      SS CI A CL
Sbjct: 318 HIWEPDMFSRPSETICLSSQVDSSSQCIPATCL 350


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 371 VQNRITEQELIQLLESVNQQMPKSTST 451
           V+ R+TE+ L Q + S+   +PK ++T
Sbjct: 492 VKKRVTEENLEQEISSIINDLPKISTT 518


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 284 ARLNTIKLSRPEKGAMVENMICRMAQM 364
           AR   I++S+  + AMV N +C M Q+
Sbjct: 452 ARFCNIEISKTTRLAMVLNQVCWMKQL 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,073
Number of Sequences: 5004
Number of extensions: 32624
Number of successful extensions: 51
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)