Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M14
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    56   5e-09
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    30   0.27 
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    28   0.82 
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz...    27   2.5  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    26   3.3  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    25   7.7  

>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 55.6 bits (128), Expect = 5e-09
 Identities = 22/61 (36%), Positives = 44/61 (72%)
 Frame = +2

Query: 200 VAGLLRYWLIHTDYWHTLSNRVEIATPLNSWKRLIEGVYLYDHKINPYDGDSFHESPIML 379
           ++  L+++L +T     L  R+E++TP++ + R+ EG+YLY++ ++PY G  F++SP++L
Sbjct: 15  ISFFLQWYLANTWIAEFLYRRIEVSTPVSGFLRVREGLYLYENGLDPYSGGVFYQSPLLL 74

Query: 380 I 382
           I
Sbjct: 75  I 75


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +3

Query: 3   GAPRGGGALEQWIPGLQESARGNINLLLQLQHWSMFTGYISFYFS*VVFYYDLI 164
           GAPR  G  + W+P     +R ++  + +  H+  F G     FS   F+Y  +
Sbjct: 110 GAPRMCGTCKCWLPDRSHHSRVSMRCIRKFDHYCSFVGK-DVCFSNQKFFYQFL 162


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -1

Query: 221 ST*ANRQLNILIWHPSLS 168
           +T AN+ L+IL+WHP++S
Sbjct: 168 NTQANKLLSILLWHPTIS 185


>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 528 LEANFSWQVIITRT*PLDVLYNKCAVRRSNNVKRR 424
           LEANF W  ++  T  L   Y K   R + +V RR
Sbjct: 276 LEANFDWNGVVNATAGLSGSYIKEVCRSALSVPRR 310


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 323 DHKINPYDGDSFHESPIMLITFHYFLKNIPYFI 421
           D+K  P +  S    PI   TFH FL ++ YF+
Sbjct: 240 DNKNLPKNSASLILPPINYDTFHSFLDSLKYFL 272


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 305 EGVYLYDHKINPYDGDSFHESPIMLITFHYFLKNI 409
           +G+  Y   + PYD     E+ I  ++FH +L+ I
Sbjct: 147 KGMCDYCSPLEPYDESYRQENKIKHLSFHAYLRKI 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,676
Number of Sequences: 5004
Number of extensions: 39927
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)