Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M13
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.51 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    29   0.67 
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.5  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   3.6  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.7  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   6.2  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    25   8.3  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 20/78 (25%), Positives = 43/78 (55%)
 Frame = -1

Query: 446 SVVLQSPIFWQTPLMPNSSIRWITLSPYTSIIV*HLAEYLAGSKPQAFSTTCTMSWSTAS 267
           S +L S I    P+  + S    ++ P +S +V   +  +  S P A S++  +  S++S
Sbjct: 647 SSILSSSIS-TIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIP-SSSS 704

Query: 266 LLSTFLTAMTTVSHTAQS 213
           L+ST+  +++ ++H++ S
Sbjct: 705 LVSTYSASLSNITHSSLS 722


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 1    ARGMKSENIHGVCKRMPKSVKSECDQFVEKYADLVISLLAQELEPSEVCTELKL 162
            A    +E I G+C ++ K  +     F+  +  L + L   ELE ++V  E +L
Sbjct: 1249 AHSQNAEKIFGICSKVVKDQEVNIPCFLLPFLVLNVILTESELEVNKVIEEFQL 1302


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 247 VKKVLSNDAVDHDIVHVVEKAC 312
           + KV+SN+ VDH IV V    C
Sbjct: 572 INKVISNEVVDHSIVFVTLIGC 593


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 341 LAEYLAGSKPQAFSTTCTMSWSTASLLSTFLTAMTTVSHTAQSRISPALT 192
           + EY+  S  QAF++T  +S ST+S +    T     S  +   +SP+ T
Sbjct: 117 VTEYVTLSCGQAFTSTVDISSSTSSSVINSPTGTAVSSQISTLSMSPSST 166


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
 Frame = +1

Query: 34  VCKRMPKSVKSECDQFVEKYADLVISLLAQELEPSEVCT--ELKLCKPSIPNF-DSVKAG 204
           + K +PKSVK    +FV K A+L  S   + L  S+  +   + L K S   F +S    
Sbjct: 287 LAKSLPKSVKGAVQEFVIK-AELTFSFSNESLASSDSISLAAIALMKTSSGVFAESELFT 345

Query: 205 EILDCAVCETVVMAVKKVLSNDAVDHDIVHVVEK 306
           E+++  + ++  +  +   SN+ + H +   +EK
Sbjct: 346 ELINLLIEKSYPILKENDGSNNFLLHALCSSLEK 379


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 172 SIPNFDSVKAGEILDCAVCETVVMAVKKVLSNDAVDHDIV 291
           ++P   S  AG     A CE    A+K++L +D    DI+
Sbjct: 251 TLPGSSSYLAGSPEKFAECEAAGSAIKRLLVDDIKPRDIM 290


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 61  KSECDQFVEKYADLVISLLAQELEPSEV 144
           +S C++F +   D +  LLA +L P  +
Sbjct: 7   QSSCEEFTDSQQDKMTKLLAMQLGPEYI 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,624
Number of Sequences: 5004
Number of extensions: 37503
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)