Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_M13
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211... 52 5e-07
12_01_0076 + 627796-627877,628706-628944,629129-629326,629415-62... 47 1e-05
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912... 44 9e-05
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138... 40 0.001
01_01_0462 + 3422352-3422439,3423057-3423241,3423333-3423530,342... 40 0.001
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 36 0.024
01_05_0795 + 25287449-25287967,25288078-25288138,25288640-252887... 34 0.097
05_03_0566 - 15521494-15521511,15521550-15521747,15521856-155220... 31 0.69
02_05_1248 - 35237036-35237252,35237843-35239491 31 0.91
07_03_0451 + 18340166-18340533,18340576-18341006,18343057-183431... 30 1.6
02_05_0440 - 29035974-29036356,29037977-29038133,29038260-290388... 30 1.6
06_01_0243 - 1837830-1837886,1837969-1838016,1838113-1838255,183... 29 2.8
05_03_0331 + 12488005-12488454,12488561-12489505 28 4.8
>05_01_0273 +
2115257-2115589,2115706-2115766,2115876-2115970,
2116072-2116184,2116278-2116551,2116923-2117036,
2117169-2117233,2117325-2117466,2117547-2117666,
2118153-2118241,2118349-2118433
Length = 496
Score = 51.6 bits (118), Expect = 5e-07
Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Frame = +1
Query: 58 VKSECDQFVEKYADLVISLLAQELEPSEVCTELKLC----KPSIPN-----FDSVKAGEI 210
+ +EC + V +Y +++++LL + +P +VC+++ LC K S+ N D G
Sbjct: 308 ISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLCMFDGKRSVSNGIESVVDKENLGSD 367
Query: 211 LDCAVCETVVMAVKKVLSNDAVDHDIVHVVEKACGLLPA---KYSARCHTMMEV 363
C+VCE V+ ++ L + I++ + C LP+ + + CH + ++
Sbjct: 368 AMCSVCEMAVVWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCHQISKM 421
>12_01_0076 +
627796-627877,628706-628944,629129-629326,629415-629474,
629596-629739,631700-631864,632636-632734,633114-633182,
633274-633370,633994-634085,635021-635152,635446-635526,
636284-636400,636497-636598
Length = 558
Score = 47.2 bits (107), Expect = 1e-05
Identities = 33/153 (21%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Frame = +1
Query: 25 IHGVCKRMPKSVKSECDQFVEKYADLVISLLAQELEPSEVCTELKLCKPSIPNFDSVKAG 204
+H C + S + +C + ++ YA LV + +A E++P E C + LC+ + ++K+
Sbjct: 94 LHDTCSQT-FSFEQKCLETMDSYATLVFAKIA-EIKPDEFCKQYGLCR-DMALLSAMKSE 150
Query: 205 EILDCAVCETVVMAVKKVLSNDAVDHDIVHVVEKACGLLPAKYSARCHTMMEVYGDSVIH 384
C C ++ + L + + +I+ ++ K C + + +C M+ Y V+
Sbjct: 151 S--TCVFCHHIIDEIMSKLKDPDAEFEIIQLLLKECNKIEG-HQQQCKRMVLQYVPLVLV 207
Query: 385 LIEEF-GINGVCQKIGLCSTTESAYVRMYREKR 480
E+F N VC I C + ++ ++
Sbjct: 208 NGEKFLEKNDVCAMIQACDAGKRKAFNLFSARK 240
>01_02_0039 -
10490522-10490606,10490674-10490810,10491107-10491248,
10491355-10491419,10491528-10491641,10491846-10492119,
10492215-10492327,10492405-10492499,10492602-10492662,
10492774-10493103
Length = 471
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Frame = +1
Query: 58 VKSECDQFVEKYADLVISLLAQELEPSEVCTELKLC----KPSIPN-----FDSVKAGEI 210
V EC Q V Y D+++ +L + P ++C+++ LC S+ N D K G
Sbjct: 307 VSMECKQVVRDYGDMILEMLIAQASPMKLCSQIGLCAFDGTRSVRNNIESVVDKEKVGSD 366
Query: 211 LDCAVCETVVMAVKKVLSND 270
L C CE V+ ++ L ++
Sbjct: 367 LSCTACEMAVVWIQNQLRHN 386
>05_07_0145 +
28012268-28012624,28012734-28012794,28013758-28013852,
28013944-28014056,28014436-28014604,28014677-28014716,
28014797-28014861,28015485-28015598,28015687-28015751,
28015927-28016083,28016167-28016286,28016447-28016535,
28016631-28016715
Length = 509
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Frame = +1
Query: 58 VKSECDQFVEKYADLVISLLAQELEPSEVCTELKLC--------KPSIPNFDSVKAGEIL 213
V EC V +Y ++ LL E +PS++C+++ LC I + +AGE
Sbjct: 316 VSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLCTFDGKHGVSAGIKSVVDDEAGESN 375
Query: 214 D------CAVCETVVMAVKKVLSNDAVDHDIVHVVEKACGLLPA 327
C CE V+ ++ L+ + I++ + + C LP+
Sbjct: 376 GLQSGPMCNACEMAVVWMQNQLAQNKTQDLILNYINQLCDKLPS 419
>01_01_0462 +
3422352-3422439,3423057-3423241,3423333-3423530,
3423617-3423676,3424022-3424171
Length = 226
Score = 39.9 bits (89), Expect = 0.001
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 1/144 (0%)
Frame = +1
Query: 25 IHGVCKRMPKSVKSECDQFVEKYADLVISLLAQELEPSEVCTELKLCKPSIPNFDSVKAG 204
+H C + +K +C V+ Y L L + P + C + LC+ G
Sbjct: 78 LHHACANVGP-LKQQCITLVDYYIPLFF-LEVSMVTPEKFCESVHLCRKGTM-LRLPSRG 134
Query: 205 EILDCAVCETVVMAVKKVLSNDAVDHDIVHVVEKACGLLPAKYSARCHTMMEVYGDSVIH 384
+ C +C V++ V +L + + +IV + KAC Y +C M+ Y ++
Sbjct: 135 DT--CGICHHVLVEVLIMLKDPDMQLEIVEIFLKACSKAD-NYVQQCKKMVLEYTPLILV 191
Query: 385 LIEEF-GINGVCQKIGLCSTTESA 453
++F VC I C T A
Sbjct: 192 KSQKFLETTDVCSTIHACKTGTQA 215
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 35.9 bits (79), Expect = 0.024
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Frame = +1
Query: 58 VKSECDQFVEKYADLVISLLAQELEPSEVCTELKLCKPSIPNFDSVKAG--EILD----- 216
V EC V +Y ++ L E +P++VC+ + LC + V AG ++D
Sbjct: 326 VSQECKAVVSQYGQQILDQLRAETKPAKVCSSVGLC--TFDGTHGVSAGIRSVVDDEVGK 383
Query: 217 ---------CAVCETVVMAVKKVLSNDAVDHDIVHVVEKACGLLPA 327
C CET V+ + L+ + ++ +++ C LP+
Sbjct: 384 SSGPFSSAMCNACETAVVWMHTQLAQNQTQDLVLQYIDQLCDRLPS 429
>01_05_0795 +
25287449-25287967,25288078-25288138,25288640-25288734,
25288827-25288939,25289480-25289648,25289777-25289816,
25289906-25289970,25290150-25290263,25290398-25290462,
25290572-25290725,25290798-25290914,25292489-25292545
Length = 522
Score = 33.9 bits (74), Expect = 0.097
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 13/100 (13%)
Frame = +1
Query: 67 ECDQFVEKYADLVISLLAQELEPSEVCTELKLCKPS-----IPNFDSV------KAGEIL 213
EC Q V ++ ++ LL + P++VC+++ LCK +SV A E+
Sbjct: 373 ECKQVVARHGHEMLELLQDKTPPAQVCSKIGLCKSDGAHGISDGIESVLGETHKSADEVS 432
Query: 214 D--CAVCETVVMAVKKVLSNDAVDHDIVHVVEKACGLLPA 327
D C CE V ++ + + + CG +P+
Sbjct: 433 DATCNACEMAVTWMQSEFVQNHTKEGKLEYANQLCGNMPS 472
>05_03_0566 -
15521494-15521511,15521550-15521747,15521856-15522037,
15522643-15522721
Length = 158
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/87 (17%), Positives = 35/87 (40%)
Frame = +1
Query: 217 CAVCETVVMAVKKVLSNDAVDHDIVHVVEKACGLLPAKYSARCHTMMEVYGDSVIHLIEE 396
C +CE L+ + +I+ + +AC P+ + C +++ Y +
Sbjct: 47 CQICEEFATEALFYLNENETQVEIIATLHQACSKFPS-FKLECTKLVDYYVSLFFTKVTS 105
Query: 397 FGINGVCQKIGLCSTTESAYVRMYREK 477
C+ + LC + ++R+ R +
Sbjct: 106 LSPEEFCESVSLCH--KVTFIRLPRHE 130
>02_05_1248 - 35237036-35237252,35237843-35239491
Length = 621
Score = 30.7 bits (66), Expect = 0.91
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +1
Query: 112 LLAQELEPSEVCTELKLCKPSIPNFDSVKAGEILDCAVCETVVMAVKKVLSNDAVDHDIV 291
LL E++ + + L C ++ +V D + V +++ K L+N D
Sbjct: 329 LLHAEIDAANIKIALGKCDEAVTVLRNVSKQVEKDSEIRALVFISMAKALANQEKAGDTK 388
Query: 292 HVVEKACGLLPAKYSARCHTMMEVYGD--SVIHLIEEF 399
+E AC +L K A + E Y + S+ ++ EF
Sbjct: 389 RCLEIACDILEKKELAAPDKVAEAYVEVSSLYEMVNEF 426
>07_03_0451 +
18340166-18340533,18340576-18341006,18343057-18343184,
18343329-18343958,18344761-18345480
Length = 758
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 217 CAVCETVVMAVKKVLSNDAVDHDIVHVVEKACGLLPAKYSARCHTMMEVYGDSVIHLIEE 396
C C T+ A + + AV+ + VVE C +P ++S+ + M + GD+ +H
Sbjct: 417 CPDCATLRDAKGRTFLHSAVEAEGYRVVEYVCRRMPKEFSSVLN-MQDNNGDTALHRAVH 475
Query: 397 FG 402
G
Sbjct: 476 LG 477
>02_05_0440 -
29035974-29036356,29037977-29038133,29038260-29038824,
29038866-29039191
Length = 476
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = -2
Query: 436 CRALSSGRRH*CRTPRSGGSRCPRTLPSLCDTWRSI*PAASRKPS 302
C +G C+TP SGG R T S C T R+ PAAS S
Sbjct: 58 CSRCPTGPSTACQTPPSGGCRSISTATSSCRTPRA--PAASGSSS 100
>06_01_0243 -
1837830-1837886,1837969-1838016,1838113-1838255,
1838784-1838982,1839085-1839265,1839857-1840228,
1841453-1841658
Length = 401
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 330 FSRQQAASLLDDMHDVVVDGVIAEHFLNGHD--DRLAHSAVQDLTCFNRIEVRYRWFAQF 157
+SR QA+ +D +V V+ + + + HD + LA+ +QD+ + I +WF F
Sbjct: 221 YSRSQASQNVDKRRRQMVQ-VLLDKYNDDHDLVEDLAYE-LQDVVHYQLIVEGIKWFNHF 278
Query: 156 EFSA 145
F+A
Sbjct: 279 NFTA 282
>05_03_0331 + 12488005-12488454,12488561-12489505
Length = 464
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 79 FVEKYADLVISLLAQELEPSEVCTELKLCKPSIPNFDSV 195
FVE A+ + L L P C ++ LC+P P D V
Sbjct: 104 FVEADANFRMDELGTSLAPPVPCYDMLLCEPESPTADVV 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,202,097
Number of Sequences: 37544
Number of extensions: 272126
Number of successful extensions: 812
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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