Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M12
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   3.6  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   3.6  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   4.8  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    25   4.8  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 326 IDFVDYYSKSSLTLF 282
           +DFVDY++KSS  +F
Sbjct: 665 VDFVDYWTKSSSEIF 679


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 282 EESKRRLGIIVDKIDTDNDGFVTLVEL*DWIRYTQKRYIDDDVE 413
           ++S   LG I+D +DTD D  V   E    +R     Y DD+ E
Sbjct: 331 QDSLESLGPIIDDMDTDMDSEVG-KEASRGVRLDDFYYFDDEEE 373


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 183 SDK*SIIRFVSSGLGTPANTAETAKATN 100
           SD  S++  + SGL TPAN  +     N
Sbjct: 580 SDSLSLLTLLKSGLPTPANDLQNKSQNN 607


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
 Frame = -3

Query: 302 KSSLTLFTEVIDQKFWPDLHPKMHHDRTAY-CGAHSCS-----VQHQINDPSFVSSLQDL 141
           +S+L   +++  +KF  +  P +   R  Y CGAH C+     V+  ++ P   SS+ +L
Sbjct: 137 RSALARVSDLFKKKFTIECMP-VQQQRNGYDCGAHVCAFTLELVRRLLHSPMPTSSMWNL 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,051
Number of Sequences: 5004
Number of extensions: 28652
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)