Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_M12
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0217 + 1647319-1648327,1648462-1648577,1648650-1648817,164... 31 0.50
11_01_0216 + 1693889-1694897,1695034-1695149,1695222-1695389,169... 31 0.50
12_01_0456 + 3587244-3587440,3587595-3587766,3587877-3587999,358... 30 0.66
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 29 1.1
07_03_0917 - 22574472-22574558,22574756-22574821,22574848-225748... 29 1.5
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811 29 2.0
03_06_0239 - 32578231-32578353,32578431-32578655,32579081-325792... 29 2.0
06_01_0506 + 3648546-3649256 28 2.7
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 28 2.7
07_03_0588 - 19715677-19715754,19715843-19715942,19716170-197162... 28 3.5
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 28 3.5
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395... 27 4.6
08_01_0406 + 3607088-3607231,3608900-3608996,3609121-3609185,361... 27 6.1
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 27 6.1
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 27 6.1
03_05_0917 + 28774068-28774128,28774293-28774392,28774413-287750... 27 8.1
>12_01_0217 +
1647319-1648327,1648462-1648577,1648650-1648817,
1648911-1649038,1649121-1649220,1649329-1649433
Length = 541
Score = 30.7 bits (66), Expect = 0.50
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 258 KLLINYLREESKRRLGIIVDKIDTDNDGFVTLVEL*DWIRYTQKRYIDDDVER 416
+++ L EE + L + ID DN G +TL EL + + ++ D+++E+
Sbjct: 375 RIIAGCLSEEEIKGLKEMFKNIDKDNSGTITLEELKNGLAKQGTKFSDNEIEQ 427
>11_01_0216 +
1693889-1694897,1695034-1695149,1695222-1695389,
1695482-1695609,1695692-1695791,1696124-1696168
Length = 521
Score = 30.7 bits (66), Expect = 0.50
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 258 KLLINYLREESKRRLGIIVDKIDTDNDGFVTLVEL*DWIRYTQKRYIDDDVER 416
+++ L EE + L + ID DN G +TL EL + + ++ D+++E+
Sbjct: 375 RIIAGCLSEEEIKGLKEMFKNIDKDNSGTITLEELKNGLAKQGTKFSDNEIEQ 427
>12_01_0456 +
3587244-3587440,3587595-3587766,3587877-3587999,
3588165-3588338,3588537-3588647,3588737-3588870,
3588945-3589038,3589122-3589220,3590494-3590630,
3590709-3590803,3590922-3591045,3591122-3591209,
3592867-3593043,3593130-3593167,3593398-3593485,
3594101-3594209,3594374-3594443,3594520-3594667,
3595069-3595197,3595292-3595417,3595596-3595658,
3595952-3596197
Length = 913
Score = 30.3 bits (65), Expect = 0.66
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -3
Query: 326 IDFVDYYSKSSLTLFTEVIDQKFWPDLHPKMHHDRTAYCGAHSCSVQHQIN 174
+D + Y + +TLF E ++ P++ +++A G H+C V +N
Sbjct: 583 VDLLTRYYEGQMTLFAEDEEENEEPEVRITEAAEKSAVTGEHTCMVLRPLN 633
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 146 PEETKRMMDHLSDAEHYRNEHHNKQFDH 229
P + + DH S H+R+ HH +Q H
Sbjct: 123 PRDHRDQHDHQSQRHHHRHHHHQRQRHH 150
>07_03_0917 -
22574472-22574558,22574756-22574821,22574848-22574886,
22574978-22575026,22575492-22575559,22575650-22575695,
22575773-22575866,22575956-22576018,22576436-22576558,
22577143-22577176,22577489-22577551,22577678-22577785,
22577914-22577976,22578322-22578378
Length = 319
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 275 VIDQKFWPDLHPKMHHDRTAYCGAHSCSVQH 183
VI++K WP P +HHD T +H +Q+
Sbjct: 112 VIEEKNWPPFLPLIHHDITNEIPSHLQRMQY 142
>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
Length = 359
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 149 EETKRMMDHLSDAEHYRNEHHNKQFDHD 232
EE +R + H H+ +EH N Q+D +
Sbjct: 295 EEEQRQLGHHHHQHHHEHEHENHQWDEE 322
>03_06_0239 -
32578231-32578353,32578431-32578655,32579081-32579248,
32579331-32579446,32579540-32579692,32579779-32579922,
32580775-32581576
Length = 576
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +3
Query: 246 KIRPKLLINYLREESKRRLGIIVDKIDTDNDGFVTLVEL*DWIRYTQKRYIDDDVE 413
K+ +++ L EE L + +DTDN G +TL EL ++ +D +++
Sbjct: 401 KMALRVIAESLSEEEIAGLKEMFKMLDTDNSGHITLEELKTGLQRVGANLMDSEID 456
>06_01_0506 + 3648546-3649256
Length = 236
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 279 REESKRRLGIIVDKIDTDNDGFVTLVEL 362
R + LGI+ D D DGF+T EL
Sbjct: 57 RPDPDADLGIVFSTFDHDGDGFITAAEL 84
>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 299 SSLTLFTEVIDQKFWPDLHPKMHHDR 222
S L F + +D+K WP+ HP DR
Sbjct: 1064 SLLLEFCKGVDRKIWPEQHPLRQFDR 1089
>07_03_0588 -
19715677-19715754,19715843-19715942,19716170-19716297,
19716385-19716552,19716623-19716735,19716820-19716972,
19717082-19717225,19718710-19719427
Length = 533
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 246 KIRPKLLINYLREESKRRLGIIVDKIDTDNDGFVTLVEL 362
K+ K++ + L EE + L + +DTDN G +T EL
Sbjct: 372 KMALKVIASNLNEEEIKGLKQMFTNMDTDNSGTITYEEL 410
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 246 KIRPKLLINYLREESKRRLGIIVDKIDTDNDGFVTLVEL 362
K+ K++ L EE L + +DTDN G +TL EL
Sbjct: 378 KVALKVVAENLSEEEIVGLKEMFKSLDTDNSGTITLEEL 416
>07_03_0539 -
19237573-19239169,19239258-19239410,19239505-19239566,
19239855-19240103,19240248-19240337,19240453-19240632,
19240713-19240942,19241558-19241735,19242327-19242432,
19242786-19242883,19243683-19243813,19243908-19244087,
19244179-19244443,19244557-19244627,19244707-19244922,
19245147-19245294
Length = 1317
Score = 27.5 bits (58), Expect = 4.6
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +2
Query: 149 EETKRMMDHLSDAEHYRNEHHNKQFDHD--AFLGEDQA--KTFDQLP 277
EE + MD+ +D Y E HN FD D +L +D + K QLP
Sbjct: 356 EEMMQEMDYNADRAWYDCEEHNTMFDGDNSMYLEDDSSYKKREAQLP 402
>08_01_0406 +
3607088-3607231,3608900-3608996,3609121-3609185,
3610268-3610372,3610492-3610554,3610801-3610834,
3610921-3611043,3611269-3611362,3611452-3611497,
3611692-3611759,3611843-3611891,3612032-3612097,
3612443-3612475
Length = 328
Score = 27.1 bits (57), Expect = 6.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -3
Query: 272 IDQKFWPDLHPKMHHDRTAYCGAHSCSVQH 183
++ K WP +P +HHD + H+ +Q+
Sbjct: 174 VEVKNWPPFYPIIHHDIASEIPIHAQKLQY 203
>01_06_0923 + 33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 27.1 bits (57), Expect = 6.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 275 VIDQKFWPDLHPKMHHD 225
VI++K WP P +HHD
Sbjct: 1088 VIEEKNWPPFFPIIHHD 1104
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 246 KIRPKLLINYLREESKRRLGIIVDKIDTDNDGFVTLVEL 362
K+ K++ L +E L + +DTDN G +TL EL
Sbjct: 354 KVALKVVAENLSDEEITGLKEMFRSLDTDNSGTITLEEL 392
>03_05_0917 +
28774068-28774128,28774293-28774392,28774413-28775056,
28775567-28775727,28776362-28776430
Length = 344
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 10/44 (22%)
Frame = +3
Query: 261 LLINYLREESKRRLGIIV----------DKIDTDNDGFVTLVEL 362
LL+ Y EE+KRRL + D+ D ++DGF+T EL
Sbjct: 233 LLVRYYGEEAKRRLVADLYTTAYLKGEFDRFDRNDDGFITSEEL 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,343,653
Number of Sequences: 37544
Number of extensions: 188104
Number of successful extensions: 565
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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