Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_M12
(421 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64601-9|AAB04578.1| 314|Caenorhabditis elegans Hypothetical pr... 50 5e-07
AF228528-1|AAF34189.1| 314|Caenorhabditis elegans calumenin-lik... 50 5e-07
U64601-10|AAP40523.1| 91|Caenorhabditis elegans Hypothetical p... 49 1e-06
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 33 0.083
AF106590-2|AAC78237.2| 301|Caenorhabditis elegans Hypothetical ... 29 1.4
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 29 1.8
Z82073-5|CAB63322.1| 333|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z29116-3|CAA82372.1| 485|Caenorhabditis elegans Hypothetical pr... 27 5.5
U20902-1|AAA84393.1| 485|Caenorhabditis elegans cyclin A protein. 27 5.5
AL032637-20|CAA21612.2| 250|Caenorhabditis elegans Hypothetical... 27 5.5
Z27080-1|CAA81600.1| 257|Caenorhabditis elegans Hypothetical pr... 27 7.2
U39667-3|AAQ91909.1| 417|Caenorhabditis elegans Xo lethal prote... 26 9.5
L35129-2|AAA67049.1| 417|Caenorhabditis elegans xol-1 protein. 26 9.5
>U64601-9|AAB04578.1| 314|Caenorhabditis elegans Hypothetical
protein M03F4.7a protein.
Length = 314
Score = 50.4 bits (115), Expect = 5e-07
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +3
Query: 282 EESKRRLGIIVDKIDTDNDGFVTLVEL*DWIRYTQKRYIDDDVER 416
E+SK +L +V K+D D+DGF+ EL D I + QKRY+++DV+R
Sbjct: 59 EKSKEKLAKLVPKMDADSDGFIEENELKDHINFMQKRYVNNDVDR 103
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = +2
Query: 170 DHLSDAEHYRNEHHNKQFDHDAFLGEDQAKTFDQLPP*RE*EK 298
D D EH++ + H+K++DH+ FLG+D A FD+L P + EK
Sbjct: 22 DPSKDGEHFKGKEHDKKYDHEQFLGKDTAAEFDELTPEKSKEK 64
>AF228528-1|AAF34189.1| 314|Caenorhabditis elegans calumenin-like
protein protein.
Length = 314
Score = 50.4 bits (115), Expect = 5e-07
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +3
Query: 282 EESKRRLGIIVDKIDTDNDGFVTLVEL*DWIRYTQKRYIDDDVER 416
E+SK +L +V K+D D+DGF+ EL D I + QKRY+++DV+R
Sbjct: 59 EKSKEKLAKLVPKMDADSDGFIEENELKDHINFMQKRYVNNDVDR 103
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = +2
Query: 170 DHLSDAEHYRNEHHNKQFDHDAFLGEDQAKTFDQLPP*RE*EK 298
D D EH++ + H+K++DH+ FLG+D A FD+L P + EK
Sbjct: 22 DPSKDGEHFKGKEHDKKYDHEQFLGKDTAAEFDELTPEKSKEK 64
>U64601-10|AAP40523.1| 91|Caenorhabditis elegans Hypothetical
protein M03F4.7b protein.
Length = 91
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = +2
Query: 170 DHLSDAEHYRNEHHNKQFDHDAFLGEDQAKTFDQLPP*RE*EK 298
D D EH++ + H+K++DH+ FLG+D A FD+L P + EK
Sbjct: 22 DPSKDGEHFKGKEHDKKYDHEQFLGKDTAAEFDELTPEKSKEK 64
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform c protein.
Length = 1099
Score = 33.1 bits (72), Expect = 0.083
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +2
Query: 242 GEDQAKTFDQLPP*RE*EKTWNNSRQNRYGQRRVRDASRTIRLDTVHSETIHRR 403
G+ Q FD P +E TW R+ ++G R D TV TIHRR
Sbjct: 79 GQKQTLKFDDCEPWQENLDTWRKKRKEKFGDRATSDT-------TVPETTIHRR 125
>AF106590-2|AAC78237.2| 301|Caenorhabditis elegans Hypothetical
protein F08B6.3 protein.
Length = 301
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 321 IDTDNDGFVTLVEL*DWIRYTQKRYID-DDVER 416
+DT+NDGFV E+ W+ + ++ +D + VER
Sbjct: 57 LDTNNDGFVDKSEILAWVSESYQKTVDREAVER 89
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/97 (20%), Positives = 42/97 (43%)
Frame = -3
Query: 380 VPYPVL*FD*RHEPVVVRIDFVDYYSKSSLTLFTEVIDQKFWPDLHPKMHHDRTAYCGAH 201
+P + F+ E +R + KS+L +F+ ++ W D K +DR +Y
Sbjct: 623 IPLEYMKFERMEEDERIRCLQIRSRVKSALIIFSSEKERNQWTDDLTKAQYDRKSYKRRQ 682
Query: 200 SCSVQHQINDPSFVSSLQDLVLRRIPPKQQKRRTEIL 90
S +VQ + ++ L ++ +P R +++
Sbjct: 683 STAVQRHDENKKKMNKLL-MLTPEVPDASDLERPQLI 718
>Z82073-5|CAB63322.1| 333|Caenorhabditis elegans Hypothetical
protein W06D12.7 protein.
Length = 333
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 407 VIVDVSFLSVPYPVL*FD*RHEPVVVRID-FVDYYSKSSLTLFTEVIDQKFWP 252
V++D+SF S PY + F + V + FVD+ SKS T VI + P
Sbjct: 248 VLIDISFTSFPYIISNFATLFQWRVPELTYFVDFMSKSGSTACIFVIFMYYDP 300
>Z29116-3|CAA82372.1| 485|Caenorhabditis elegans Hypothetical
protein ZK507.6 protein.
Length = 485
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 266 QKFWPDLHPKMHHDRTAYCGAHSC-SVQHQIND 171
++F+PD+ M H +T +H C +Q Q+N+
Sbjct: 210 EEFFPDIIKYMLHRQTKNRASHECFDIQSQVNE 242
>U20902-1|AAA84393.1| 485|Caenorhabditis elegans cyclin A protein.
Length = 485
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 266 QKFWPDLHPKMHHDRTAYCGAHSC-SVQHQIND 171
++F+PD+ M H +T +H C +Q Q+N+
Sbjct: 210 EEFFPDIIKYMLHRQTKNRASHECFDIQSQVNE 242
>AL032637-20|CAA21612.2| 250|Caenorhabditis elegans Hypothetical
protein Y43F8C.10 protein.
Length = 250
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 408 RHRRCIVSECTVSSLIVRLASRTRRCPYRFC 316
+ RR C S++ RL R CP+R C
Sbjct: 111 KERRPNCQRCAQHSVVNRLKGHKRACPFRDC 141
>Z27080-1|CAA81600.1| 257|Caenorhabditis elegans Hypothetical
protein F55H2.2 protein.
Length = 257
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 120 ETAKATNRDLSILTSCKVPRQQNHVNFLIPENRERKR 10
E K TNR ++ + +PR +N + +++ E E +R
Sbjct: 162 EAIKVTNRRVNAIEHVIIPRIENTLTYIVTELDEMER 198
>U39667-3|AAQ91909.1| 417|Caenorhabditis elegans Xo lethal protein
1, isoform b protein.
Length = 417
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 152 ETKRMMDHLSDAEHYRNEHHNKQFDHDAFLGEDQAKTFDQ 271
E K + + +E +EHH +++D D + E++A + Q
Sbjct: 369 EVKPVSPGETSSEGISDEHHYEEYDEDDIMEEEEAPSARQ 408
>L35129-2|AAA67049.1| 417|Caenorhabditis elegans xol-1 protein.
Length = 417
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 152 ETKRMMDHLSDAEHYRNEHHNKQFDHDAFLGEDQAKTFDQ 271
E K + + +E +EHH +++D D + E++A + Q
Sbjct: 369 EVKPVSPGETSSEGISDEHHYEEYDEDDIMEEEEAPSARQ 408
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,871,673
Number of Sequences: 27780
Number of extensions: 162533
Number of successful extensions: 602
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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