Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M12
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   2.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   4.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   4.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.5  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   7.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 396 CIVSECTVSSLIVRLASRTRRCPY 325
           C+V E T+ SL     + + +CPY
Sbjct: 614 CVVVEETIPSLNSTNVTLSTKCPY 637


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 188 EHYRNEHHNKQFDHDAFLGE 247
           E++ + +  K FD +  LGE
Sbjct: 414 EYFEHRYQGKFFDEELILGE 433


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 188 EHYRNEHHNKQFDHDAFLGE 247
           E++ + +  K FD +  LGE
Sbjct: 382 EYFEHRYQGKFFDEELILGE 401


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 200 NEHHNKQFDHDAFLGEDQ 253
           N  H KQ  HD  L   Q
Sbjct: 296 NTDHTKQLSHDVLLRAKQ 313


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -1

Query: 151 FRTWYSGEY 125
           FR WY G Y
Sbjct: 109 FRQWYEGHY 117


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 16/65 (24%), Positives = 23/65 (35%)
 Frame = -3

Query: 320 FVDYYSKSSLTLFTEVIDQKFWPDLHPKMHHDRTAYCGAHSCSVQHQINDPSFVSSLQDL 141
           F D   K     FT+      W +    +H D   Y   H  +   + +D       +DL
Sbjct: 467 FADRGMKVYYYFFTQRTSTNLWGEWMGVLHGDEVEYVFGHPLNKSLKYSDKE-----RDL 521

Query: 140 VLRRI 126
            LR I
Sbjct: 522 SLRMI 526


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -2

Query: 141  GTPANTAETAKATNRDLSILTSCKVPR 61
            G  A  AET+  T+         KVPR
Sbjct: 1241 GVGAGIAETSAGTSNSRGAAQMSKVPR 1267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,575
Number of Sequences: 438
Number of extensions: 1906
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)