Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_M11
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ... 27 1.4
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 26 2.5
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 2.5
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 26 2.5
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 25 4.4
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 4.4
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 25 4.4
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 4.4
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce... 25 5.8
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 25 7.6
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 25 7.6
>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 27.1 bits (57), Expect = 1.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 283 DPAM*EQEVAN*VFRTRASTPLGVPKRNRRLRIVSRVLGNRITAAEY 143
DP EQ+ A F + S+PL PK + + + R+ G + Y
Sbjct: 88 DPKTIEQKEARSKFMEKISSPLHWPKLTKVIEDIERIHGQDVKIGAY 134
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 194 TTIPFRNTQRSRSSRPKDSVGDFLLLHCW 280
+T+P + Q SRS P+ D L CW
Sbjct: 147 STVPPSSLQFSRSQPPESKESDATLAKCW 175
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 26.2 bits (55), Expect = 2.5
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +1
Query: 301 VFGEVL---DELARRVHLGSNAPSAPSTLEMAPIYPDIDKF 414
+ GEVL DEL +HLG+ S PS MA + D+F
Sbjct: 599 LLGEVLRLSDELLP-IHLGAKIQSLPSLFNMASQFTAEDRF 638
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 2.5
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = -2
Query: 371 DGADGALEPR----WTRRANSSKTSPNTRSDIF*PSNVRAGSR 255
D AL P+ W R SKT+PN S PS+ +A +R
Sbjct: 181 DSPTEALPPKPTTPWRRNGFRSKTTPNLNSGKETPSSYKASAR 223
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 438 RVRFRLFCEFIDVRIYRRHFESRRG 364
R+R +LF F +IYR+ E RRG
Sbjct: 897 RIRLQLFQLFTPEKIYRKLREFRRG 921
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 367 PSTLEMAPIYPDIDKFAKETETYTATLPGEQYIY 468
P + + P YPD F+ ETY P E Y Y
Sbjct: 76 PQPVPVQPRYPDEQNFSMNGETY----PSEAYDY 105
>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 4.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 358 PSAPSTLEMAPIYPDID 408
P +PS ++ +P YPD D
Sbjct: 59 PRSPSEMDWSPYYPDFD 75
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 147 SAAVILLPSTRETILKRRFRFGTPNGVEALVRKTQLAT 260
S V+ P+ + KRR R+ T + ++ +R+ +LAT
Sbjct: 617 SRHVVATPTDKLGTRKRRLRYSTSSFDQSTLRRNRLAT 654
>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 437 VYVSVSFANLSMSGYIGAISRVDGADGAL 351
VY ++ F + + G + SR DG+DG L
Sbjct: 320 VYFTIGFKSPATIGVEQSTSRYDGSDGVL 348
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 24.6 bits (51), Expect = 7.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 81 NFHFPVVLVYYTLCGVRLSYLYSA 152
N+HFP + V Y+ + LS ++SA
Sbjct: 194 NYHFPYLTVMYSTGPLFLSIIWSA 217
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 24.6 bits (51), Expect = 7.6
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -1
Query: 117 EYNKPEPQENENFLI*NI 64
+YN P+P+ NE++L N+
Sbjct: 182 DYNDPKPEANEDYLSLNL 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,466
Number of Sequences: 5004
Number of extensions: 41561
Number of successful extensions: 129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -