Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_M11
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0266 - 19558769-19559275,19560852-19560933,19561354-195618... 30 0.81
03_01_0376 + 2931338-2931414,2931609-2931755,2933105-2933173,293... 30 1.1
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 29 1.9
08_02_1078 + 24179558-24179936,24180577-24180634,24180721-241808... 28 4.3
06_01_0937 + 7227290-7227387,7227459-7227508,7227628-7227818 28 4.3
01_06_1451 + 37451004-37451113,37451422-37451661,37451765-374518... 28 4.3
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 27 5.7
03_05_0727 - 27170082-27170336,27170398-27170793,27171009-27171014 27 5.7
06_01_0219 + 1666921-1667120,1667418-1667466,1669432-1669626 27 7.5
05_04_0126 + 18252594-18256922 27 7.5
03_02_0810 + 11429776-11429985,11430003-11430935 27 7.5
02_03_0042 - 14319847-14320187,14320256-14320274 27 7.5
01_05_0237 + 19706178-19706263,19706327-19706552 27 7.5
11_06_0592 - 25327128-25329566 27 10.0
10_01_0286 - 2978630-2979075,2980050-2980194 27 10.0
07_03_1699 - 28807154-28807218,28807324-28807466,28807570-288077... 27 10.0
04_04_0722 - 27570215-27570388,27570492-27570561,27570765-27570886 27 10.0
02_02_0587 + 11875678-11877234,11877606-11877608,11877755-118778... 27 10.0
01_01_1057 + 8349384-8349827 27 10.0
>05_04_0266 -
19558769-19559275,19560852-19560933,19561354-19561865,
19563113-19563124
Length = 370
Score = 30.3 bits (65), Expect = 0.81
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 397 PDIDKFAKETETYTATLP 450
PDID+F KE Y ATLP
Sbjct: 111 PDIDRFLKENPEYAATLP 128
>03_01_0376 +
2931338-2931414,2931609-2931755,2933105-2933173,
2933256-2933427,2933505-2933733,2933826-2934343
Length = 403
Score = 29.9 bits (64), Expect = 1.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 341 TWAPMHHQPRLLSKWRRYILTSINS 415
TW+P H L+K ++++LT +NS
Sbjct: 225 TWSPSEHDDDALAKNKKFVLTKLNS 249
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 29.1 bits (62), Expect = 1.9
Identities = 29/80 (36%), Positives = 37/80 (46%)
Frame = -2
Query: 407 SMSGYIGAISRVDGADGALEPRWTRRANSSKTSPNTRSDIF*PSNVRAGSRQLSLSDESF 228
S SG I A+SR GA T R+N+S S +R SNV SR SLS +
Sbjct: 195 SSSGAIPAMSR----PGASTISATSRSNASTISATSRPGSS-SSNVPGISRATSLSSSTV 249
Query: 227 DSVGCSETESSFKDRFASTR 168
S+ S + SS R + R
Sbjct: 250 PSMSRSSSRSSTPTRQPAMR 269
>08_02_1078 +
24179558-24179936,24180577-24180634,24180721-24180804,
24180908-24181010,24181359-24181649
Length = 304
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 187 SLNDDSVSEHPTESKLSSERLSWRLPALTLLGQNMSLRVFGEVLDELARR 336
+L+ S+S++ +S LSS SW L G S +G+VL L RR
Sbjct: 41 TLSSLSLSQNSNDSSLSSSNSSWEPKVPLLYGGTFS--PWGDVLVSLERR 88
>06_01_0937 + 7227290-7227387,7227459-7227508,7227628-7227818
Length = 112
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -2
Query: 413 NLSMSGYIGAISRVDGADGALEPR--WTRRAN 324
+L + YI A DGA A +PR W RR N
Sbjct: 39 DLLLVNYIAAHGEYDGAGAAADPRVAWPRRGN 70
>01_06_1451 +
37451004-37451113,37451422-37451661,37451765-37451846,
37452159-37452200,37452285-37452344,37453020-37454663,
37454763-37454864,37455846-37455986,37456077-37456202,
37456376-37456543
Length = 904
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 266 AGSRQLSLSDESFDSVGCSETESSFKDR 183
AGSRQ S S + S GCS+T+ S+K +
Sbjct: 625 AGSRQSSSSIDK--SAGCSQTQESYKSQ 650
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 304 FGEVLDELARRVHLGSNAPSAPSTLEMAPIYPDIDK-FAKETET 432
FG VLD++ V +AP+ P+ L+ P Y + + F E +T
Sbjct: 730 FGYVLDDVPHLVDHLPDAPTYPNPLQDHPAYSTVKQYFVNEDDT 773
>03_05_0727 - 27170082-27170336,27170398-27170793,27171009-27171014
Length = 218
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 344 WAPMHHQPRLLSKWRRYILTSINSQK 421
+A +H P L SKW +++ IN +K
Sbjct: 166 YAERYHCPELKSKWLSFLMAEINFKK 191
>06_01_0219 + 1666921-1667120,1667418-1667466,1669432-1669626
Length = 147
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 356 HHQPRLLSKWRRYILTSINSQKRRKRTRLH 445
H Q R LS RY+ +I+SQK R + LH
Sbjct: 43 HVQYRFLSSRGRYVWFNISSQKLRIQVYLH 72
>05_04_0126 + 18252594-18256922
Length = 1442
Score = 27.1 bits (57), Expect = 7.5
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = +1
Query: 244 RLSWRLPALTLLGQNMSLRVFGEVLDELARRVHLGSNAPSAPSTLE-------MAPIYPD 402
RL L+++G++ ++ E L + H+ S P P L+ + ++ D
Sbjct: 369 RLMLNSEGLSIIGRSSDTKIMQETAMMLKQ--HMESVVPKPPIQLDDIQYLDILQKVFLD 426
Query: 403 ID-KFAKETETYTATLPGEQYI 465
AKET T TAT GE +I
Sbjct: 427 TKPSHAKETSTNTATTLGEDHI 448
>03_02_0810 + 11429776-11429985,11430003-11430935
Length = 380
Score = 27.1 bits (57), Expect = 7.5
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +1
Query: 298 RVFGEVLDELARRVHLG---SNAPSAPSTLEMAPIY--PDIDKFAKETETYTATLPGEQY 462
+V+ V DE A ++ L NA + P T AP PD+ K E T LP E Y
Sbjct: 272 QVYQVVRDEFAAQIKLPVVPGNA-TGPYTCFSAPSQAKPDVPKLVLHFEGATMDLPRENY 330
Query: 463 IY 468
++
Sbjct: 331 VF 332
>02_03_0042 - 14319847-14320187,14320256-14320274
Length = 119
Score = 27.1 bits (57), Expect = 7.5
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 306 W*SLR*-VGTTCPPGLQCTISPVYSRNGADIS*HR*IRKRDGNVHGYITGRAV 461
W +LR VGTT P ++CTI R R+RDG+ G T V
Sbjct: 38 WSALRSAVGTTAFPSIRCTIEDEIKRINHRHGEKSMERERDGDYPGLFTSTIV 90
>01_05_0237 + 19706178-19706263,19706327-19706552
Length = 103
Score = 27.1 bits (57), Expect = 7.5
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 306 W*SLR*-VGTTCPPGLQCTISPVYSRNGADIS*HR*IRKRDGNVHGYITGRAV 461
W +LR VGTT P + CTI R R+RDG+ G +T V
Sbjct: 42 WSALRSAVGTTAFPSICCTIEDEIKRINPRHGEESMERERDGDYPGLLTSTIV 94
>11_06_0592 - 25327128-25329566
Length = 812
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 310 EVLDELARRVHLGSNAPSAPSTLEMAPIYPDIDKFAKE 423
E DE R + +AP +PS +EM P+ D+ K A E
Sbjct: 161 EKRDEFLRAIDHVHHAPPSPSAIEMLPL--DLGKDALE 196
>10_01_0286 - 2978630-2979075,2980050-2980194
Length = 196
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 340 HLGSNAPSAPSTLEMAPIYPDIDKFAKETETYTATLP 450
H AP+APST +PD K T TY P
Sbjct: 153 HHNKPAPAAPSTKPAPKPHPDQPPHPKPTPTYGTPSP 189
>07_03_1699 -
28807154-28807218,28807324-28807466,28807570-28807715,
28808142-28808242,28808314-28808365,28808483-28808538,
28808616-28808721,28809314-28809358
Length = 237
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 400 DIDKFAKETETYTATLPGE 456
++DK A++TE T T PGE
Sbjct: 38 EVDKLAEKTENLTVTEPGE 56
>04_04_0722 - 27570215-27570388,27570492-27570561,27570765-27570886
Length = 121
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 126 VRLSYLYSAAVILLPSTRETILKRRFRFGTPNGVEALVRKTQLATSCSYI 275
+RLS + +P E + RFR P+G ++ V+K +L S S I
Sbjct: 47 IRLSRVQGNGGNKVPDLEEHRIGARFRIDPPSGSQSSVQKKELFPSPSTI 96
>02_02_0587 +
11875678-11877234,11877606-11877608,11877755-11877823,
11878605-11878719,11879139-11879248
Length = 617
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 343 LGSNAPSAPSTLEMAPIYPDIDKFAKETETYTA 441
L S +PS P+TL I+PD D A T A
Sbjct: 33 LSSASPSEPTTLPPPTIHPDPDATATSPTTAAA 65
>01_01_1057 + 8349384-8349827
Length = 147
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 327 GTTCPPGLQCTISPVYSRNGADIS 398
GTTC G SP+++ GAD++
Sbjct: 16 GTTCREGYLLRFSPLFAELGADVN 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,325,634
Number of Sequences: 37544
Number of extensions: 275003
Number of successful extensions: 776
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -