Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M11
         (468 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126370-1|AAI26371.1|  362|Homo sapiens TMEM129 protein protein.      31   2.0  
D87012-1|BAA20009.1|  753|Homo sapiens topoisomerase-III protein.      30   4.6  
BX276189-2|CAI95730.1| 1034|Homo sapiens teashirt family zinc fi...    29   8.0  
AL121902-2|CAI95385.1| 1034|Homo sapiens teashirt family zinc fi...    29   8.0  
AK091206-1|BAC03610.1| 1034|Homo sapiens protein ( Homo sapiens ...    29   8.0  

>BC126370-1|AAI26371.1|  362|Homo sapiens TMEM129 protein protein.
          Length = 362

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -3

Query: 403 CQDISAPFRE*TGLMVHWSPGGHVVPTHLRLHQIRAATYSDPAM*EQEVAN*VFRTRAST 224
           C+ + AP R    +++H S G   + T   L ++  A YS P+  E E      +TRAS 
Sbjct: 237 CEKLRAPIRRAAHVVIHQSLGDLFLETFASLVEVNPA-YSVPSSQELEACIGCMQTRASV 295

Query: 223 PL 218
            L
Sbjct: 296 KL 297


>D87012-1|BAA20009.1|  753|Homo sapiens topoisomerase-III protein.
          Length = 753

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
 Frame = +2

Query: 152 RSYPIAEYSRNDP*TTIPFRNTQRSRSSR--------PKDSVGDFLLLHCWVRICR 295
           +SYP+  Y  N P    PFR+ +++  SR         K S G     HCW+R CR
Sbjct: 688 KSYPLCPYCYNHP----PFRDMKKAEGSRGGNQRWQCEKGSTG-----HCWLRGCR 734


>BX276189-2|CAI95730.1| 1034|Homo sapiens teashirt family zinc
           finger 2 protein.
          Length = 1034

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 409 YRCQDISAPFRE*TGLMVHWSPGGHVVPTHLRLHQIRAATYSDP 278
           +RC+  SA +     L VH +  GH    + +  ++R  +YS P
Sbjct: 215 FRCRQCSAAYDTLVELTVHMNETGHYQDDNRKKDKLRPTSYSKP 258


>AL121902-2|CAI95385.1| 1034|Homo sapiens teashirt family zinc
           finger 2 protein.
          Length = 1034

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 409 YRCQDISAPFRE*TGLMVHWSPGGHVVPTHLRLHQIRAATYSDP 278
           +RC+  SA +     L VH +  GH    + +  ++R  +YS P
Sbjct: 215 FRCRQCSAAYDTLVELTVHMNETGHYQDDNRKKDKLRPTSYSKP 258


>AK091206-1|BAC03610.1| 1034|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33887 fis, clone CTONG2007400, highly similar to
           Mus musculus teashirt 2 (Tsh2) gene. ).
          Length = 1034

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 409 YRCQDISAPFRE*TGLMVHWSPGGHVVPTHLRLHQIRAATYSDP 278
           +RC+  SA +     L VH +  GH    + +  ++R  +YS P
Sbjct: 215 FRCRQCSAAYDTLVELTVHMNETGHYQDDNRKKDKLRPTSYSKP 258


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,481,610
Number of Sequences: 237096
Number of extensions: 1473635
Number of successful extensions: 7166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7166
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)