Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M11
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin prote...    29   1.3  
U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein...    29   1.7  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    29   1.7  
AF068716-8|AAC17749.1|  554|Caenorhabditis elegans Innexin prote...    28   3.8  
Z71259-7|CAA95793.1|  423|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z37092-8|CAA85460.2|  327|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U59210-1|AAB09669.1|  423|Caenorhabditis elegans EAT-5 protein.        27   5.1  
AY037792-1|AAK94756.1|  327|Caenorhabditis elegans SRA-12 protein.     27   5.1  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin protein
           15 protein.
          Length = 382

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 22  GSLQTHDALCVLALNILNEK 81
           GS+Q +   CVL++N+LNEK
Sbjct: 249 GSIQKYSVQCVLSMNMLNEK 268


>U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein
           10, isoform b protein.
          Length = 492

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 22  GSLQTHDALCVLALNILNEK 81
           G++Q H   CVL +NI NEK
Sbjct: 263 GNMQEHTIQCVLVINIFNEK 282


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
           10, isoform a protein.
          Length = 559

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 22  GSLQTHDALCVLALNILNEK 81
           G++Q H   CVL +NI NEK
Sbjct: 263 GNMQEHTIQCVLVINIFNEK 282


>AF068716-8|AAC17749.1|  554|Caenorhabditis elegans Innexin protein
           4 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 22  GSLQTHDALCVLALNILNEK 81
           G+ Q H   CVL +NI NEK
Sbjct: 300 GNNQRHSVQCVLVINIFNEK 319


>Z71259-7|CAA95793.1|  423|Caenorhabditis elegans Hypothetical
           protein F13G3.8 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 22  GSLQTHDALCVLALNILNEK 81
           G+LQ +   CVL LN+ NEK
Sbjct: 257 GNLQRYSIQCVLTLNMFNEK 276


>Z37092-8|CAA85460.2|  327|Caenorhabditis elegans Hypothetical
           protein F44F4.7 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +3

Query: 27  ASDPRCTLRSCFKYSK*ENFHFPVVLVYYTLCGVRLSYLYSAAVILLPSTRETI 188
           A + RC      +Y   EN      + Y ++      ++YS  V+L+   RE I
Sbjct: 210 AIEKRCRFDVTQRYLTSENLKTTQAICYLSIAQFLAMFMYSGGVLLMRKNRENI 263


>U59210-1|AAB09669.1|  423|Caenorhabditis elegans EAT-5 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 22  GSLQTHDALCVLALNILNEK 81
           G+LQ +   CVL LN+ NEK
Sbjct: 257 GNLQRYSIQCVLTLNMFNEK 276


>AY037792-1|AAK94756.1|  327|Caenorhabditis elegans SRA-12 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +3

Query: 27  ASDPRCTLRSCFKYSK*ENFHFPVVLVYYTLCGVRLSYLYSAAVILLPSTRETI 188
           A + RC      +Y   EN      + Y ++      ++YS  V+L+   RE I
Sbjct: 210 AIEKRCRFDVTQRYLTSENLKTTQAICYLSIAQFLAMFMYSGGVLLMRKNRENI 263


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 431 VSVSFANLSMSGYIGAISRVDGADGALEPRWTRRAN 324
           +S S  N+S  GY G       AD  LEP+W+R  N
Sbjct: 308 ISDSICNISGFGYDGL------ADETLEPKWSRTTN 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,256,487
Number of Sequences: 27780
Number of extensions: 231767
Number of successful extensions: 716
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)