Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M11
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.9  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.7  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    21   8.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 356 HHQPRLLSKWRRYILTSINSQKRRKRTRLHY 448
           H  P+L+ K     L +I   +R K+TRL +
Sbjct: 328 HRMPQLIRKIFLKYLPTILMMRRPKKTRLRW 358


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 330 TTCPPGLQCTISP 368
           T CPP L C ++P
Sbjct: 211 TACPPTLACPLNP 223


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 333 TCPPGLQCTISPVYSRNGADIS 398
           TCP G +C     ++ N  D S
Sbjct: 760 TCPAGCKCYNDRTWNTNAVDCS 781


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 340 HLGSNAPSAPSTLEMAPIYPDIDKFA 417
           H GS+A ++P+    + +YP +   A
Sbjct: 71  HSGSSASTSPAARTTSSMYPYVSAAA 96


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 346 PGGHVVPTHLRL 311
           P G ++PTHL++
Sbjct: 405 PEGFMIPTHLKV 416


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 340 HLGSNAPSAPSTLEMAPIYPDID 408
           HL  N P+  ST+  A   P+++
Sbjct: 13  HLSPNMPTMDSTVSSAKPEPELN 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,837
Number of Sequences: 438
Number of extensions: 2648
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)