Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M10
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...   247   3e-66
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347...   244   3e-65
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126...   148   2e-36
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746...    51   4e-07
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293     31   0.64 
06_02_0197 - 12912818-12913411,12913505-12913732                       30   1.1  
02_03_0037 + 14215616-14216941                                         29   2.0  
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192           29   2.6  
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140...    27   7.9  

>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score =  247 bits (605), Expect = 3e-66
 Identities = 112/148 (75%), Positives = 127/148 (85%)
 Frame = +3

Query: 18  CRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 197
           C ++ MGK RG+   RK   HRR QRWADK +KK+H+G  WK  PF G+SHAKGIVLEK+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224

Query: 198 GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDI 377
           G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDI
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDI 284

Query: 378 PGVRFKVVKVANVSLLALYKEKKERPRS 461
           PGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 285 PGVRFKVVKVSGVSLLALFKEKKEKPRS 312



 Score =  240 bits (588), Expect = 4e-64
 Identities = 109/141 (77%), Positives = 122/141 (86%)
 Frame = +3

Query: 33  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 212
           MGK RG+   RK   HRR QRWADK +KK+H+G  WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 213 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 392
           QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 393 KVVKVANVSLLALYKEKKERP 455
           KVVKV+ VSLLAL+KEKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140


>03_06_0466 -
           34134138-34134278,34134355-34134481,34134558-34134713,
           34135831-34135835
          Length = 142

 Score =  244 bits (597), Expect = 3e-65
 Identities = 111/143 (77%), Positives = 124/143 (86%)
 Frame = +3

Query: 33  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 212
           MGK RG+   RK   HRR QRWADK +KK+H+G  WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 213 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 392
           QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 393 KVVKVANVSLLALYKEKKERPRS 461
           KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>10_06_0053 -
           10110617-10111271,10112023-10112417,10112565-10112650,
           10112973-10113021,10114164-10114290,10114372-10114526,
           10114730-10114948
          Length = 561

 Score =  148 bits (359), Expect = 2e-36
 Identities = 71/113 (62%), Positives = 82/113 (72%)
 Frame = +3

Query: 6   RSRSCRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIV 185
           R+ SC A    K  G+   RK   HRR QRWADK +KK+H G  WK  PF G+SHAKGIV
Sbjct: 67  RAWSCGA----KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIV 121

Query: 186 LEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 344
           LEK+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+   V G
Sbjct: 122 LEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174


>05_03_0026 +
           7466017-7466034,7466340-7466405,7466572-7466833,
           7467254-7467294
          Length = 128

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = +3

Query: 324 DEVLVAGFGRKGHAVGDIPGVRFKVVK 404
           DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67  DEVLISGFGHKGHAVGDIRGVRFEVVK 93


>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
          Length = 352

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -3

Query: 406 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 275
           TL+ LNL  G SP   P  P P  +     SM + QP   TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297


>06_02_0197 - 12912818-12913411,12913505-12913732
          Length = 273

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 249 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 151
           V +H   WL +A+ LQR +FR     H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217


>02_03_0037 + 14215616-14216941
          Length = 441

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 6   RSRSCRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWK-ANPFGGASHAKGI 182
           +SRS       +PR +  A K  + R+E+   +KE +K  +  R + +NPFG A   + +
Sbjct: 292 KSRSSNPFGAARPREVVLATKGDDGRKEEE-KEKEEEKLEIQPRTRTSNPFGAARPREEV 350

Query: 183 VLEK 194
           +  K
Sbjct: 351 LAAK 354


>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
          Length = 283

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 26  YR-NG*TSGYSHGAQARESSSRAAMGRQGIQKSP 124
           YR +G  +GY HG + +  SSR +  R G+  +P
Sbjct: 187 YRVHGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220


>03_06_0572 +
           34812203-34812278,34812485-34813768,34813973-34814049,
           34814299-34814646
          Length = 594

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 400 TTLNLTPGMSPTAWPLRPNPATNTSS 323
           TT   TP M+P   P  P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,853,806
Number of Sequences: 37544
Number of extensions: 329340
Number of successful extensions: 965
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)