Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M09
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    28   0.73 
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   9.0  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.0  

>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 28/127 (22%), Positives = 51/127 (40%)
 Frame = +2

Query: 119 IPTSV*TASPRGVQTRHSMPWKPTRYC*EVWHSPSTNPKVASS*TCFTSGSVEKSSSAGT 298
           +PT+V T+    V +  S P   + +      S S+N +  ++     + S E++++  T
Sbjct: 518 VPTTVSTSG--SVSSFSSSPSPTSSFSGTSALSSSSNEETTTTTQVTYTTSPEETTT--T 573

Query: 299 VTTTICSRITREXXXXXXXXXXXXXXXXXXXXXXXCSDTSPFARHGTHRPFSATYYTSAF 478
           +TTT CS    E                          +S  +   +H   S+ + +SA 
Sbjct: 574 MTTTTCSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSVHSSSAH 633

Query: 479 LSTSDSS 499
            S+S SS
Sbjct: 634 SSSSRSS 640


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 263 SGSVEK-SSSAGTVTTTICSRIT 328
           SG+VE   ++AGTVTTTI S  T
Sbjct: 207 SGTVEVVDTAAGTVTTTIYSGTT 229



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 263 SGSVEK-SSSAGTVTTTICSRIT 328
           SG+VE   ++AGTVTTTI S  T
Sbjct: 279 SGTVEVVDTAAGTVTTTIYSGTT 301



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 263 SGSVEK-SSSAGTVTTTICSRIT 328
           SG+VE   ++AGTVTTTI S  T
Sbjct: 351 SGTVEVVDTAAGTVTTTIYSGTT 373



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 263 SGSVEK-SSSAGTVTTTICSRIT 328
           SG+VE   ++AGTVTTTI S  T
Sbjct: 423 SGTVEVVDTAAGTVTTTIYSGTT 445



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 263 SGSVEK-SSSAGTVTTTICSRIT 328
           SG+VE   ++AGTVTTTI S  T
Sbjct: 495 SGTVEVVDTAAGTVTTTIYSGTT 517



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 263 SGSVEK-SSSAGTVTTTICSRIT 328
           SG+VE   ++AGTVTTTI S  T
Sbjct: 567 SGTVEVVDTAAGTVTTTIYSGTT 589


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 443 RPFSATYYTSAFLSTSDSSRTTTQ 514
           RPF+++++++ FLS+  SS   +Q
Sbjct: 155 RPFTSSFHSAPFLSSYGSSNDPSQ 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,076
Number of Sequences: 5004
Number of extensions: 26000
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)