Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M09
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0835 + 21636358-21636673,21637182-21637729                       31   0.42 
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601...    30   0.98 
12_02_0850 + 23651496-23651801,23651893-23651986,23652280-236523...    28   4.0  
01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162     28   4.0  
03_06_0035 - 31201115-31203646                                         27   6.9  
02_01_0064 - 470490-470576,471297-471358,471447-471675                 27   9.1  

>08_02_0835 + 21636358-21636673,21637182-21637729
          Length = 287

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 87  GGQWARGPCACGRQPLFEIRVHL 19
           GG W+RGP   GR+P   +R H+
Sbjct: 112 GGIWSRGPIPLGRRPKLTVRFHV 134


>06_03_0345 +
           19758188-19758382,19759857-19759952,19760061-19760144,
           19760504-19760573,19760934-19761838,19763661-19764287
          Length = 658

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 104 WFPSHIPTSV*TASPRGVQTRHSMPWKPTRYC*EVWHSPSTNPKVASS 247
           W+P   P     A  R  + R S+P  P R C   W  P T+PK A++
Sbjct: 334 WWPVPAPPERAAAGSRRARARPSIPPLPRRACPSSWPFP-TSPKRAAA 380


>12_02_0850 +
           23651496-23651801,23651893-23651986,23652280-23652398,
           23652456-23652578,23652919-23652978,23653473-23653523
          Length = 250

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 515 LALWFYCCRKLIRKRR-CNTSH*KVY 441
           L +W Y CRK  R R+ C T H  VY
Sbjct: 76  LPIWIYVCRKDFRSRKLCLTPHAIVY 101


>01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162
          Length = 708

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 435 EPIDLSVRRITPPLSYQLPTAVEPQRKP 518
           +P+ L+V ++ PP++ ++PT + P  KP
Sbjct: 516 QPVQLTVPKVEPPVNLKIPT-LSPLHKP 542


>03_06_0035 - 31201115-31203646
          Length = 843

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 215 NAKLPSSSALVSTALNVASVRLEDLQFKLRWEYAT 111
           N  L + + + STA  +AS    D +F + WE  T
Sbjct: 277 NTPLIAPANIYSTAQQMASTNTSDARFNITWEMVT 311


>02_01_0064 - 470490-470576,471297-471358,471447-471675
          Length = 125

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -3

Query: 123 GICDGNQHGPQGGGQWARGPCACGRQPLFE 34
           G C G  +G  GG     G C CGR    E
Sbjct: 51  GGCGGGVYGEAGGVCGGAGGCCCGRAGFVE 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,181,455
Number of Sequences: 37544
Number of extensions: 214868
Number of successful extensions: 526
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)