Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M09
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/110 (20%), Positives = 39/110 (35%)
 Frame = +2

Query: 179 WKPTRYC*EVWHSPSTNPKVASS*TCFTSGSVEKSSSAGTVTTTICSRITREXXXXXXXX 358
           W    +C   +++ +   +  +S     S S + SSS+ T +T+  S             
Sbjct: 12  WVANGFCTSTFYTTAQKTQYCASTCSLCSDSSDSSSSSSTASTSSSSSTA---ATSSDDS 68

Query: 359 XXXXXXXXXXXXXXXCSDTSPFARHGTHRPFSATYYTSAFLSTSDSSRTT 508
                           SDT+      T    S+T  +++  STS S  T+
Sbjct: 69  SSSSSSSSSSASSTSSSDTTTADSSSTTSSDSSTTSSNSSSSTSSSDSTS 118


>Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical
           protein E03G2.4 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 111 GNQHGPQGGGQWARGPCACGRQP 43
           GN +G QGGG    G C CG+ P
Sbjct: 126 GNNYGSQGGG---GGCCGCGQSP 145


>Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 215 SPSTNPKVASS*TCFTSGSVEKSSSAGTVTT 307
           +PST P+ +SS + F + S   +++  TVTT
Sbjct: 62  TPSTPPRASSSSSMFAASSPSAAATYSTVTT 92


>Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 215 SPSTNPKVASS*TCFTSGSVEKSSSAGTVTT 307
           +PST P+ +SS + F + S   +++  TVTT
Sbjct: 62  TPSTPPRASSSSSMFAASSPSAAATYSTVTT 92


>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical
           protein F43C1.1 protein.
          Length = 1036

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -3

Query: 261 VKQVQLEATFGFVDG 217
           ++QV++E TFGF+DG
Sbjct: 686 IRQVRVENTFGFIDG 700


>Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical
           protein F58A4.1 protein.
          Length = 254

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +2

Query: 101 CWFPSHIPT--SV*TASPRGVQTRHSMPWKPTRYC*EVWHSPSTNPKVASS*TCFTSGSV 274
           C  P   PT  S+ T++      R + P++ T        SPST+   ++S    TS S 
Sbjct: 56  CKCPPKSPTTTSISTSTVSTTPERLTKPYEETDTPIPTHSSPSTSTSTSTS----TSTST 111

Query: 275 EKSSSAGTVTTTICSRIT 328
             S S  TVT T  S  T
Sbjct: 112 STSRSTSTVTPTTRSSTT 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,706,980
Number of Sequences: 27780
Number of extensions: 162784
Number of successful extensions: 449
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)