Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M08
         (550 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122194-1|AAM52706.1|  644|Drosophila melanogaster LD44686p pro...    28   7.2  
AE014298-1967|AAO41653.1|  644|Drosophila melanogaster CG33174-P...    28   7.2  
AE014298-1966|AAO41652.1|  737|Drosophila melanogaster CG33174-P...    28   7.2  

>AY122194-1|AAM52706.1|  644|Drosophila melanogaster LD44686p
           protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -3

Query: 545 IVIFCQNV*NIGTVCFNYTDQTISVRSIFFSLIGFRIENVYTIFS*EINFGCIIVS 378
           I   C  + ++  V F Y  + +SV+ +F+ LIG+ +      FS  +  G  ++S
Sbjct: 28  IHFICFVIVSVSLVIFEYNTRILSVKLLFYHLIGYLL---ILFFSICVEIGICVIS 80


>AE014298-1967|AAO41653.1|  644|Drosophila melanogaster CG33174-PA,
           isoform A protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -3

Query: 545 IVIFCQNV*NIGTVCFNYTDQTISVRSIFFSLIGFRIENVYTIFS*EINFGCIIVS 378
           I   C  + ++  V F Y  + +SV+ +F+ LIG+ +      FS  +  G  ++S
Sbjct: 28  IHFICFVIVSVSLVIFEYNTRILSVKLLFYHLIGYLL---ILFFSICVEIGICVIS 80


>AE014298-1966|AAO41652.1|  737|Drosophila melanogaster CG33174-PD,
           isoform D protein.
          Length = 737

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -3

Query: 545 IVIFCQNV*NIGTVCFNYTDQTISVRSIFFSLIGFRIENVYTIFS*EINFGCIIVS 378
           I   C  + ++  V F Y  + +SV+ +F+ LIG+ +      FS  +  G  ++S
Sbjct: 28  IHFICFVIVSVSLVIFEYNTRILSVKLLFYHLIGYLL---ILFFSICVEIGICVIS 80


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,951,360
Number of Sequences: 53049
Number of extensions: 372155
Number of successful extensions: 869
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)