Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_M08
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ... 34 0.077
U49947-6|AAA93424.1| 85|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z93383-8|CAB07629.1| 286|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical p... 29 2.9
AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase... 29 2.9
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ... 27 6.7
Z92833-3|CAB07378.1| 506|Caenorhabditis elegans Hypothetical pr... 27 8.9
U51163-1|AAA96319.1| 506|Caenorhabditis elegans fork head/HNF-3... 27 8.9
U41036-8|ABA61866.1| 590|Caenorhabditis elegans Dopamine recept... 27 8.9
U41036-7|ABA61865.1| 607|Caenorhabditis elegans Dopamine recept... 27 8.9
U41036-6|ABA61864.1| 605|Caenorhabditis elegans Dopamine recept... 27 8.9
AY485309-1|AAR37416.1| 607|Caenorhabditis elegans DOP-3 protein. 27 8.9
>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
protein Y39D8B.1 protein.
Length = 1372
Score = 33.9 bits (74), Expect = 0.077
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = +3
Query: 282 VNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEK 461
+ D G++E+ +GV + + D+ F KDG ++ K N TE
Sbjct: 489 MEDTGQEEWMNFVLEASGVTETVEKMRIAEEKEQDEERRKDFVDKDGRPMYFTKENVTEI 548
Query: 462 YG----TNTDSLIGIVKTNGSDVLYVL 530
YG T D + GI KT D L L
Sbjct: 549 YGEYEATKIDLINGIYKTMSKDQLDAL 575
>U49947-6|AAA93424.1| 85|Caenorhabditis elegans Hypothetical
protein C30G4.5 protein.
Length = 85
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 169 SYLDEYWTNSFMNSSDDTMSFSSLFSVTGAAFIN 68
S LDE W +S + SDD++ S S TG F N
Sbjct: 40 SILDEKWRSSCSDDSDDSLPVGSYIS-TGQCFFN 72
>Z93383-8|CAB07629.1| 286|Caenorhabditis elegans Hypothetical
protein F54B8.9 protein.
Length = 286
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -2
Query: 483 NYQCSFH-IFQSYWFSHRKRIYHL 415
N+QCS + +Q YW +H + +Y+L
Sbjct: 159 NFQCSVNQCYQDYWVNHEQVLYYL 182
>Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical
protein T04A11.6 protein.
Length = 988
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 87 VTENNDEKLIVSSELFINEFVQYSSKYDIV 176
VT+ D + +S+LFI+ FV+ + KYD++
Sbjct: 420 VTDARDHLKMQNSKLFISSFVRDNLKYDLI 449
>AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase
protein.
Length = 988
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 87 VTENNDEKLIVSSELFINEFVQYSSKYDIV 176
VT+ D + +S+LFI+ FV+ + KYD++
Sbjct: 420 VTDARDHLKMQNSKLFISSFVRDNLKYDLI 449
>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
protein C48E7.6 protein.
Length = 1764
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 339 ATKILETGTDASATNDDTTEVYFSA--KDGIYVFDAKTNKTEKYGTNTDSLIGIV 497
AT + + +AS + + + ++ K G FD TN + Y TNTD GIV
Sbjct: 1501 ATPLTTSQINASTLLNSSPRFFLTSPLKFGRLTFDPNTNYSTYYFTNTDIQKGIV 1555
>Z92833-3|CAB07378.1| 506|Caenorhabditis elegans Hypothetical
protein F38A6.1a protein.
Length = 506
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 270 VEADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTN 449
+E + N K E+++K L NG + +TG AT+ + V ++A + +N
Sbjct: 51 LETEKNRKREQKHK---MLPNGTTSGTSDTGNQVPATSSAASSVDYTAMNAQDYLPTYSN 107
Query: 450 KTEKY 464
T Y
Sbjct: 108 TTLNY 112
>U51163-1|AAA96319.1| 506|Caenorhabditis elegans fork
head/HNF-3-like protein protein.
Length = 506
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 270 VEADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTN 449
+E + N K E+++K L NG + +TG AT+ + V ++A + +N
Sbjct: 51 LETEKNRKREQKHK---MLPNGTTSGTSDTGNQVPATSSAASSVDYTAMNAQDYLPTYSN 107
Query: 450 KTEKY 464
T Y
Sbjct: 108 TTLNY 112
>U41036-8|ABA61866.1| 590|Caenorhabditis elegans Dopamine receptor
protein 3, isoformc protein.
Length = 590
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 142 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 38
SF SS TMS SS + T + IN N PKK+
Sbjct: 240 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 274
>U41036-7|ABA61865.1| 607|Caenorhabditis elegans Dopamine receptor
protein 3, isoformb protein.
Length = 607
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 142 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 38
SF SS TMS SS + T + IN N PKK+
Sbjct: 257 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 291
>U41036-6|ABA61864.1| 605|Caenorhabditis elegans Dopamine receptor
protein 3, isoforma protein.
Length = 605
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 142 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 38
SF SS TMS SS + T + IN N PKK+
Sbjct: 255 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 289
>AY485309-1|AAR37416.1| 607|Caenorhabditis elegans DOP-3 protein.
Length = 607
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 142 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 38
SF SS TMS SS + T + IN N PKK+
Sbjct: 257 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 291
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,253,199
Number of Sequences: 27780
Number of extensions: 208773
Number of successful extensions: 565
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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