Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M07
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058...    60   5e-10
03_01_0468 - 3612079-3612197,3612679-3612850                           39   0.001
02_01_0006 - 42752-43816                                               28   2.3  
01_06_1354 - 36599904-36600643,36600851-36601352                       27   5.2  
09_02_0133 + 4707944-4708308,4708320-4708534,4708626-4708672,470...    26   9.1  

>10_07_0172 +
           13804803-13805293,13805423-13805537,13805766-13805831,
           13805921-13806009,13806103-13806193,13806312-13806458,
           13806575-13806667,13806745-13806846,13806957-13807541,
           13808523-13808813,13808866-13808937
          Length = 713

 Score = 60.1 bits (139), Expect = 5e-10
 Identities = 28/59 (47%), Positives = 39/59 (66%)
 Frame = -1

Query: 243 SKSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLSL*SGAAEHFHDTSK 67
           ++ PG  LRLE+G+DV++ DR+L VP D T  + +ELH DL  L+  +GAA H H   K
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTPGAGAAHHLHHDGK 663


>03_01_0468 - 3612079-3612197,3612679-3612850
          Length = 96

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 19/45 (42%), Positives = 29/45 (64%)
 Frame = -1

Query: 243 SKSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLS 109
           +K PG  L LE+G+DV++++R+L VP D T  +  EL   L  L+
Sbjct: 10  AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHLGHLT 54


>02_01_0006 - 42752-43816
          Length = 354

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 168 EREGTCPRRRHPDPSRVGA*SQETSIKVLYPRLRLIMYQL 287
           ER  T P R  P PS V A + E S ++  PR+R  +  L
Sbjct: 113 ERLSTAPARCFPSPSPVAA-AAEISTEIPQPRVRTTLLYL 151


>01_06_1354 - 36599904-36600643,36600851-36601352
          Length = 413

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +2

Query: 5   EVHVYISRSSIYNSKWISLTFLLVS*KCSAAPDHRDSVLRSKWSSSER 148
           E  + ++  +I+ +KW ++  LLV    +A  +H +S LR +  +  R
Sbjct: 170 EDRIIMAAHAIHGNKWAAIAKLLVGRTDNAIKNHWNSTLRRRHCTGGR 217


>09_02_0133 +
           4707944-4708308,4708320-4708534,4708626-4708672,
           4708997-4709393,4710042-4710608,4710708-4710838,
           4711274-4711747
          Length = 731

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 228 FTLRLEKGQDVSVADRSLHVPDDLTASLSD 139
           + LR+  G + ++AD  + +PD++    SD
Sbjct: 602 YLLRIGNGTENTIADDDVRLPDEIVIGYSD 631


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,905,477
Number of Sequences: 37544
Number of extensions: 165538
Number of successful extensions: 347
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)