Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_M06
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 284 4e-78
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 130 2e-31
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 124 6e-30
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 80 2e-16
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.90
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 27 1.6
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 3.6
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 25 4.8
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 8.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 284 bits (697), Expect = 4e-78
Identities = 126/164 (76%), Positives = 148/164 (90%)
Frame = +3
Query: 6 RLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRM 185
RLHFFM GFAPL + GS ++A++VPELTQQMFDA NMM A DPRHGRYLTVAA+FRG++
Sbjct: 262 RLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKV 321
Query: 186 SMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRI 365
SMKEVDEQ+ ++Q KNS+YFVEWIP+NV AVC +PP+ LKM+ATFIGNST+IQE+F+R+
Sbjct: 322 SMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRL 381
Query: 366 SEQFTAMFRRNAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 497
+QF+AMFRR AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 382 GDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 130 bits (313), Expect = 2e-31
Identities = 58/171 (33%), Positives = 97/171 (56%), Gaps = 8/171 (4%)
Frame = +3
Query: 6 RLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRM 185
R+HF + +AP+ S + + +V E+T Q F+ N M CDPR GRY+ ++RG +
Sbjct: 264 RIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDV 323
Query: 186 SMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLK--------MAATFIGNSTA 341
++V + I+ K + FV+W P K +CD PP+ ++ A + N+T+
Sbjct: 324 IPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTS 383
Query: 342 IQELFKRISEQFTAMFRRNAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 494
I E + R+ +F M+ + AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 384 IAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 124 bits (300), Expect = 6e-30
Identities = 55/171 (32%), Positives = 97/171 (56%), Gaps = 8/171 (4%)
Frame = +3
Query: 6 RLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRM 185
R+HF + ++P+ S + + +V E+T Q F+ N M CDPR GRY+ ++RG +
Sbjct: 268 RIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDV 327
Query: 186 SMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTA 341
++V + +I+++ + FV+W P K +C PP+ + A + N+T+
Sbjct: 328 IPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTS 387
Query: 342 IQELFKRISEQFTAMFRRNAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 494
I E + R+ +F M+ + AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 388 IAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 79.8 bits (188), Expect = 2e-16
Identities = 44/172 (25%), Positives = 93/172 (54%), Gaps = 10/172 (5%)
Frame = +3
Query: 6 RLHFFMPGFAPLTSRGSQQYRAL---TVPELTQQMFDAKNMMAACDP-RHGRYLTVAAIF 173
R HF + + P T++ ++ +A+ TV ++ +++ KN M + +P + ++++ I
Sbjct: 265 RCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDII 324
Query: 174 RGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP---RGLKMAATFIGNSTAI 344
+G +V + +L I+ + + F+ W P +++ A+ P +++ + N T+I
Sbjct: 325 QGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSI 384
Query: 345 QELFKRISEQFTAMFRRNAFLHWYTGEGMDEMEFTEAESNMN---DLVSEYQ 491
LFKR +Q+ + +RNAFL Y E + E + E +S+ + DL++EY+
Sbjct: 385 ASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.9 bits (59), Expect = 0.90
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 330 NSTAIQELFKRISEQFTAMFRRNAFLHWYTGEGMDE 437
NS+ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 168 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG--NSTA 341
++ + ++ + + ++NI+ N S W+PN + +P G K++ I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 342 IQELFK 359
+EL++
Sbjct: 403 KEELYE 408
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 147 RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 272
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +3
Query: 147 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 263
+Y+ ++F G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 207 QMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG 329
++ +I+ K S++ E +P + TAV P GL +A TF+G
Sbjct: 375 RLWSIKEKAVSFWNE-LPELI-TAVAFSPDGGLAIAGTFVG 413
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,111
Number of Sequences: 5004
Number of extensions: 31967
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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