Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M06
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.1  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   7.1  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   7.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.1  

>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 41  HVPRQSAVPRAHRPRAHT 94
           H P+Q+   + H P+AH+
Sbjct: 283 HAPKQTVRFKVHDPKAHS 300


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 457 SASVNSISSMPSPVYQCKKALR-LNIAVN 374
           +AS NS+ S+P  ++   + LR +++A N
Sbjct: 267 NASYNSLDSLPEGLFASTRDLREIHLAYN 295


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 383 SGELFRDALEQLLDGGRVTDEGR 315
           +G +  + ++ +LD G  T+EGR
Sbjct: 36  NGRILTNYIKCMLDEGPCTNEGR 58


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 383 SGELFRDALEQLLDGGRVTDEGR 315
           +G +  + ++ +LD G  T+EGR
Sbjct: 36  NGRILTNYIKCMLDEGPCTNEGR 58


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 24  PGFAPLTSRGSQQYRALTVPELTQQ 98
           PG  P   + +QQ++ +    L+QQ
Sbjct: 219 PGMHPRQQQQAQQHQGVVTSPLSQQ 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,432
Number of Sequences: 438
Number of extensions: 2152
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)