Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_M05
(538 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal prote... 217 3e-57
AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical ... 30 1.2
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 29 1.6
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 29 1.6
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr... 29 2.1
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 29 2.1
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 29 2.8
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 29 2.8
AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical ... 29 2.8
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 28 3.7
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 28 3.7
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical pr... 27 8.6
U55857-5|AAA98031.1| 602|Caenorhabditis elegans Hypothetical pr... 27 8.6
>U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 15 protein.
Length = 204
Score = 217 bits (531), Expect = 3e-57
Identities = 96/171 (56%), Positives = 122/171 (71%)
Frame = +2
Query: 26 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDNARRLGYRAKQCYV 205
MGAY+Y+QE++RKK SD +R+LLRIR W YRQL+ +HR PRPTRP+ ARRLGYRAKQ +V
Sbjct: 1 MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60
Query: 206 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 385
++R+ TYGKPK+HGVN+LK ++ Q++AE NSYW
Sbjct: 61 VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120
Query: 386 VAQDSSYKYFEVILIDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGKSS 538
VA+DS+YK++EV+LIDP H AIRR+P WI VHKHRE RGLTSAG+ S
Sbjct: 121 VAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKS 171
>AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.4 protein.
Length = 335
Score = 29.9 bits (64), Expect = 1.2
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Frame = +1
Query: 133 APRSQAHEARQCEKAWIPCQ--AMLCYLQNPRAPWWP*TPSAQ--GSYLRQTQEPWCQPT 300
AP+ Q A QC++ CQ A +C Q +P P+ Q + +QTQ+ Q
Sbjct: 164 APQCQQPSAPQCQQCQNTCQQYAPVCQQQCAPQCTFPSAPACQQCQTSCQQTQQCQQQCI 223
Query: 301 ETHSQPAV----YC*GACWSPV 354
QPA C AC SPV
Sbjct: 224 PQCQQPAAPQCQQCQSACQSPV 245
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 29.5 bits (63), Expect = 1.6
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Frame = +1
Query: 121 VDSYAPRSQAHEARQCEKAWIPCQ--AMLCYLQNPRAPWWP*TPSAQ--GSYLRQTQEPW 288
V AP+ Q A QC++ CQ A +C Q P P+ Q + +QTQ+
Sbjct: 244 VQQCAPQCQQPSAPQCQQCQNTCQQYAPVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCQ 303
Query: 289 CQPTETHSQPAV----YC*GACWSPV 354
Q QPA C AC SPV
Sbjct: 304 QQCIPQCQQPAAPQCQQCQSACQSPV 329
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 29.5 bits (63), Expect = 1.6
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Frame = +1
Query: 121 VDSYAPRSQAHEARQCEKAWIPCQ--AMLCYLQNPRAPWWP*TPSAQ--GSYLRQTQEPW 288
V AP+ Q A QC++ CQ A +C Q P P+ Q + +QTQ+
Sbjct: 245 VQQCAPQCQQPSAPQCQQCQNTCQQYAPVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCQ 304
Query: 289 CQPTETHSQPAV----YC*GACWSPV 354
Q QPA C AC SPV
Sbjct: 305 QQCIPQCQQPAAPQCQQCQSACQSPV 330
>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical
protein K12D12.1 protein.
Length = 1520
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +2
Query: 404 YKYFEVILIDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGK 532
YK ++ IL++ + N +RDPK+N I ++K + + + GK
Sbjct: 117 YKIYDEILVNAADNK-QRDPKMNTIKITINKEKNEISVYNNGK 158
>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical
protein K12D12.1 protein.
Length = 1520
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +2
Query: 404 YKYFEVILIDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGK 532
YK ++ IL++ + N +RDPK+N I ++K + + + GK
Sbjct: 117 YKIYDEILVNAADNK-QRDPKMNTIKITINKEKNEISVYNNGK 158
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 29.1 bits (62), Expect = 2.1
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Frame = +1
Query: 133 APRSQAHEARQCEKAWIPCQAMLCYLQNPRAP--WWP*TPSAQ--GSYLRQTQEPWCQPT 300
AP+ Q A QC++ CQ Q AP P P+ Q + +QTQ+ Q
Sbjct: 388 APQCQQPSAPQCQQCQNTCQQFAPVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCHQQCI 447
Query: 301 ETHSQPAV----YC*GACWSPV 354
QPA C AC SPV
Sbjct: 448 PQCQQPAAPQCQQCQSACQSPV 469
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 153 RGQTMREGLDTVPSNVMLSSESACAVVAVNA-QCPRELPTANPRAMVSTN*NPLATCS 323
R T G P + SS S ++A Q P TA PR V+ +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 153 RGQTMREGLDTVPSNVMLSSESACAVVAVNA-QCPRELPTANPRAMVSTN*NPLATCS 323
R T G P + SS S ++A Q P TA PR V+ +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336
>AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.5 protein.
Length = 335
Score = 28.7 bits (61), Expect = 2.8
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Frame = +1
Query: 133 APRSQAHEARQCEKAWIPCQ--AMLCYLQNPRAPWWP*TPSAQ--GSYLRQTQEPWCQPT 300
AP+ Q A QC++ CQ A +C Q P P+ Q + +QTQ+ Q
Sbjct: 164 APQCQQPSAPQCQQCQNTCQQYAPVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCQQQCI 223
Query: 301 ETHSQPAV----YC*GACWSPV 354
QPA C AC SPV
Sbjct: 224 PQCQQPAAPQCQQCQSACQSPV 245
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 395 DSSYKYFEVILIDPSHNAIRRDP-KINWIVNAVHKHREMR 511
D Y F +L D + R DP K++W V AVHK E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 395 DSSYKYFEVILIDPSHNAIRRDP-KINWIVNAVHKHREMR 511
D Y F +L D + R DP K++W V AVHK E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458
>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
protein T16G12.1 protein.
Length = 1890
Score = 27.9 bits (59), Expect = 4.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 286 WCQPTETHSQPAVYC*GACWSP 351
WC P T+ + A+YC A ++P
Sbjct: 807 WCNPYSTNLRKAIYCGAAKYAP 828
>Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical
protein R03D7.2 protein.
Length = 542
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 50 ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 148
EL R + + + ++ R W LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296
>U55857-5|AAA98031.1| 602|Caenorhabditis elegans Hypothetical
protein K08D10.5 protein.
Length = 602
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 50 ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 148
EL R + + + ++ R W LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,182,908
Number of Sequences: 27780
Number of extensions: 237241
Number of successful extensions: 681
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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